Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00086 ATGAGGCTCTTACTCTCACTTTCCTCTCTCTCTTCTTTTTCTTCTTCCTCCTCTGTTTCTTTTCCAACACGCCCTCTCCTTCTTCACTTTTCTCAATTTTCAACTTCTTCTTCCTGGCGCCATGAGGAGGATTCTCGAAATGTAAGGGTTTCAGTCTGGTGGGACTTTGAGAATTGCAACATTCCTTCTGGTACCAATGTCTTTAAGGTTGCCCATTTAATCACTGCTGCTGTTAGGGCCAATGGCATCAAAGGTCCTGTTCAGATTACTGCTTTTGGTGACGTTTTTCAGCTCTCCAGGGCTAACCAGGAGGCTCTCTCTTCTACTGGAATTAGCCTCAATCACGTTCCTCAAGGTGGTAAAAACAGTGCTGATAGGTCTCTTCTTGTAGATCTTATGTACTGGGTTTCTCAAAACCCTCCACCAGCACATCTTTTTCTAATTTCTGGTGATAGGGACTTTGCCAGCATTCTGCACCGTTTGAGAATGAATAATTACAACGTGTTGCTAGCAAGCACTGAAAGTGCTCCTGGTGTTTTATGCAGTGCTGCAAGCATCATGTGGCATTGGCATGCTTTAATTAGAGGGGAAAATTTAGTCGGAAGGCATTTTAATCGACCACCTGATGCTTTTTACGGTCATTTTAGGGTTCCTCTTGAAGACCCATTTCCAGTTAATGGGAAACCATCTTTTTTACGAGTCCAGGAAGTTTCTGAGCTCAATCCTAAGCCACATCCCATTCAGGTTTCTGAGCTTACTTCAGATCCTAAGCCCCGTCTCATTCCGAAGGCAGTCATTAAGCATATAAACAACATTTTGAAGTTGAATCCCAAAGGACTCCCCATTACAGATCTTCGCTCAGAGTTGGGAAAGTGTGGTATATTTATAGACAAGGACTTGTATGGTTACAAAAAGTTTTCTCGATTTCTTTTGTCAATGCCACAGATTTTAAAGCTTCAAGCAAATGGTGATGGCCACTTTATTGTCCATAGTGCCACTCCAAAGCAGCCCAAAGAAGAATTAGAGTCTAGTACAGGTACATTTGGTAATGGCACTGAAGAGCAGGACCCTAATCTGACAGCAAAGTTAAGTAACGATGATTCCTCAACAGGACCGATGTGCGTACCAGTCCTTCTATCCGATGCCCACACCCAAGGCAGACCATTGAAGGAGAAACCAACTTCCGAATTTGGGAAGTCCATTGGTGAAGCTATGGAAGGGGAACCTTCAAGATCCCCTGTTTCTGAGCAGGACCCTTATCTGACAGCAAAGTTAAGTAACAATGATTCCTCAACAGAACCGATGTGTGTACCAGTCCTATCCGATGCCCACACCCAAGGCAAACCATTGGAGGAGAAACGAACTTCCAAATTTGGGAAGTCCATTAGTGATGTTATGGAAGGGGAACCATCAAGATCCCCTGTTTCTGAGCTAAGTGCTATAGAAGATTCGAAGCAGACAAATAAAGTTGAAGCTGACAGTAATACAACTCCTTCAATTGGACAGCATTCTAAGGCCAAGACGGGAGTTTTTAGAAGAATATGGAGAAAGCTTTTAGGCAATAATGACACTATGTCTGAAAATGGAAGTCATTGTATTTCTGAAAAATGCTCTACAACAGATGATACTTCGAAGCATAAAAGTTGCGGTGGCCTTGTGGCAACTTATTCTAGTGACAGGCTTGGGGAGGCAAAAACTGAAGGAAGAACTGCTGAGCCAATGAGTGAAGATGCTAATTCAGTGCATCAAGTTTTAAATTCACCTGATCGTAAGTTTGTTAAGCCTCAGAAAGAAGTCATAGTTGACAGTGCACATGATGATAAATCTAGTTCTAATCAAGGACTACTTAGTAGCATTAGAAATTGGTTCAAGCTTTGGGGAAGGAGTACTGAGAACAGTGAAGTCAGCGAGCACTATTGTGAACAAAACCAGTTAAAGAATCAATCTGGGAAGCATCATCTTTTTTCCAGCGGTTCTACTGAGAACAGTGAAGTCAGCGAGCATTCTTGTGAACAAAACCAGCTAAAGAATCAATCTGGGAAACATCATCCTTTTTCCAGCAGTTCTACTGAGAACAGTGAAGTCAGCGAGCATTCTTGTGAACAAAACCAGTTAAAGAATCAATCTGGGAAACATCATCTTTTTTCCAGCAGTTCTACTGAGAACGGTGAAGTCGGCGAGCATTCTTGTGAACAAAACCAGTTAAAGAATCAATCTGGGAAACATCATCTTTTTTCCAGTAGTTCTTTCTGGCAAGACATGCAATCCTTTATGGGAACACCTACAGGAGTGGAGATTATTTCACGGTCAAAAACCAGGTCTGAGATAGCTCAAAATCTGCTAGAGAGAGGACCTCCAATTCTGAACACTTTAAGCACTAGTGAACTCTTCGACTTATTGGAATTATTAATATCAGACAAGAAATGGGTGGAAGAATTCCCATCTAAAACATTTCCTTTTAAGCTCACTCTCTCTATTGCAAGGAAAAGCTCTTGCATGAAACCATTGGATCGTGCAAATGGATTGGCATCAATCTTTTCAAACAAAGAGTCACGGCTCAGTTTCAAGGGACCTCGAAAACATGATTCAGATTCAGATAAGAAAAATGAAAATATTCCTCCTGAAGCTGGAACTAATAAAACTAAGACTGAAAACACATTTCCTGAGAGGACGAGATACGAGATGTTAGGTGACTGTCAAAAGCTCGTGGATGAGATCTTGAGGGATTACCCAGAAGGATATAATATAGGCTCCTTCAGAAGACTGTTTCTTGAGAAGTATGGGTATCATCTTGATTTGAAGAAGCTTGGTTATCCTAAGTTGGTATCGTTGCTGCAGATAATGCCTGGAGTGACAATAGCATCCACCTTTATAGTTCCTACCAGTAATGCCCCTAACGTTTCAATGCTGGAAACAACTCTTCCCAGTAATTCTGAGAAAAAAGCTTCTGATGCTGTAGCAAACTCGAACTCTGATAATGAATCATCTGACCTGCCTAAAAAGGATGATGATTTTGAGTCTGCATGGGAAGAATTGGGTCCAGCCTGCACAGATTGCAACAACAAAGAGGAATTGACATTGAGTAGTGAAACAACAGAAGCGAATGAGAAAAGAACCGAAGTTTATTATGAACCTGTCCTTTCAGAGGATGAAACTGATGGAGAGTCTTGTCCTCCCACGGAAGTGCCAGCCAAACAACGAATAAGTGAGGAAGAAAGTTCTTTAATTCAAATTCTTGATTCATGGTATAGCAGCAAAGAAAACATTAGGAAAGACAAGACAGAAGATAGCGATGAGACCTTTGTTGTTTCTGAAAATAGCTTGAAGCTTTCTAGTTTAGCTCCCAAAAGTGAAGAAAATACAGGAAGCTTTGGTACAAAGAAAAGACATCGAAAGTATTGTTTTGTTTCAGACACCACTGAAAATGGCAAGGATAAGCTGATCGATGGGATTTTGGGTACCTTGAAAAAATCTAGCGAGTCAGATAAACTGAATCAAGCATGA 3504 41.24 MRLLLSLSSLSSFSSSSSVSFPTRPLLLHFSQFSTSSSWRHEEDSRNVRVSVWWDFENCNIPSGTNVFKVAHLITAAVRANGIKGPVQITAFGDVFQLSRANQEALSSTGISLNHVPQGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFASILHRLRMNNYNVLLASTESAPGVLCSAASIMWHWHALIRGENLVGRHFNRPPDAFYGHFRVPLEDPFPVNGKPSFLRVQEVSELNPKPHPIQVSELTSDPKPRLIPKAVIKHINNILKLNPKGLPITDLRSELGKCGIFIDKDLYGYKKFSRFLLSMPQILKLQANGDGHFIVHSATPKQPKEELESSTGTFGNGTEEQDPNLTAKLSNDDSSTGPMCVPVLLSDAHTQGRPLKEKPTSEFGKSIGEAMEGEPSRSPVSEQDPYLTAKLSNNDSSTEPMCVPVLSDAHTQGKPLEEKRTSKFGKSISDVMEGEPSRSPVSELSAIEDSKQTNKVEADSNTTPSIGQHSKAKTGVFRRIWRKLLGNNDTMSENGSHCISEKCSTTDDTSKHKSCGGLVATYSSDRLGEAKTEGRTAEPMSEDANSVHQVLNSPDRKFVKPQKEVIVDSAHDDKSSSNQGLLSSIRNWFKLWGRSTENSEVSEHYCEQNQLKNQSGKHHLFSSGSTENSEVSEHSCEQNQLKNQSGKHHPFSSSSTENSEVSEHSCEQNQLKNQSGKHHLFSSSSTENGEVGEHSCEQNQLKNQSGKHHLFSSSSFWQDMQSFMGTPTGVEIISRSKTRSEIAQNLLERGPPILNTLSTSELFDLLELLISDKKWVEEFPSKTFPFKLTLSIARKSSCMKPLDRANGLASIFSNKESRLSFKGPRKHDSDSDKKNENIPPEAGTNKTKTENTFPERTRYEMLGDCQKLVDEILRDYPEGYNIGSFRRLFLEKYGYHLDLKKLGYPKLVSLLQIMPGVTIASTFIVPTSNAPNVSMLETTLPSNSEKKASDAVANSNSDNESSDLPKKDDDFESAWEELGPACTDCNNKEELTLSSETTEANEKRTEVYYEPVLSEDETDGESCPPTEVPAKQRISEEESSLIQILDSWYSSKENIRKDKTEDSDETFVVSENSLKLSSLAPKSEENTGSFGTKKRHRKYCFVSDTTENGKDKLIDGILGTLKKSSESDKLNQA 1167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 725357 730345 + MELO3C023273.2.1 Cme11g00086 340749

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00086 1167 MobiDBLite consensus disorder prediction 973 994 - -
Cme11g00086 1167 CDD LOTUS 896 954 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 333 418 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 1048 1071 - -
Cme11g00086 1167 Pfam OST-HTH/LOTUS domain 900 953 IPR025605 -
Cme11g00086 1167 Pfam OST-HTH/LOTUS domain 265 328 IPR025605 -
Cme11g00086 1167 PANTHER EMB|CAB71880.1 1 664 - -
Cme11g00086 1167 Gene3D - 41 190 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 490 504 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 338 371 - -
Cme11g00086 1167 ProSiteProfiles OST-type HTH domain profile. 261 333 IPR025605 -
Cme11g00086 1167 Pfam NYN domain 49 184 IPR021139 GO:0004540
Cme11g00086 1167 CDD PIN_limkain_b1_N_like 49 172 - -
Cme11g00086 1167 PANTHER LIMKAIN B LKAP 1 664 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cme11g00086 1167 PANTHER LIMKAIN B LKAP 672 1106 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cme11g00086 1167 Gene3D - 261 336 IPR041966 -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 853 888 - -
Cme11g00086 1167 ProSiteProfiles OST-type HTH domain profile. 895 973 IPR025605 -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 853 873 - -
Cme11g00086 1167 PANTHER EMB|CAB71880.1 672 1106 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 973 1002 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 649 738 - -
Cme11g00086 1167 MobiDBLite consensus disorder prediction 464 505 - -
Cme11g00086 1167 Gene3D - 892 956 IPR041966 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00086 - - - cmo:103499661 2279.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01229 Cme-Chr9:17187751 Cme11g00086 Cme-Chr11:725357 3.76E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g399 . . . . Bpe07g00379 . . Bma12g00451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005338 1 4 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00086 Cme_Chr11 FPKM 4.157831 4.583301 9.577508 11.461739 36.818161 40.434372 38.960403 14.796847 14.974817 17.203663