Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00099 ATGTTTTGTAGTTTAGACACTGTAATTCCATTTTTCCAGCCATGCCAATCGATCAAAGTGGAAGAACGGCAAGATGCCGAGTCAGAGCCAGCACTGGCTAGCTATCTTTACTCGACGATTTTGTCGCATTCATCACTCGAGAGACCACTTTCGTTTCATTTGGGGAACAAACTCAGCTCTTCCACGCTTCTTTCCACTCTTCTTTACGATCTTTTCCTCAACGCTTTCTCCACTGATTATGGTCTACGATCAGCAGTTGCCTCCTCAATTACAAAGGTGCTAGCACTAGCACTTCAATCACGCATTGCTGATGTCTTCGCCGTCGACATTCATCCTGCAGCAAGAATTGGGAAAGGCGTTCTATTCGATCATGCTACTGGTGTAGTGGTTGGTGAGACGGCAGTGATAGGCAACAATGTCTCAATTCTTCATCATGTCACTCTTGGAGGGACAGGAAAGATGTGTGGAGACAGGCATTCAAAGATTGGGGATGGAGTCTTAATCGGCGCTGGAGCAACCATTCTCCGCAATGTGAAGATTGGAGAAGGAGCTAAAATCGGGGCAGGATCTGTGGTGCTCATTGATGTGCCACCACGAACAACTGCCGTGGGAAATTACGCAAGGCTGGTCGGGGGGAAGGAAAAACCATCACAGCTCGAGGATATTCCTGGAGAATCCATGGATCATACTTCTTTCATATCCGAATGGTCATAA 714 46.92 MFCSLDTVIPFFQPCQSIKVEERQDAESEPALASYLYSTILSHSSLERPLSFHLGNKLSSSTLLSTLLYDLFLNAFSTDYGLRSAVASSITKVLALALQSRIADVFAVDIHPAARIGKGVLFDHATGVVVGETAVIGNNVSILHHVTLGGTGKMCGDRHSKIGDGVLIGAGATILRNVKIGEGAKIGAGSVVLIDVPPRTTAVGNYARLVGGKEKPSQLEDIPGESMDHTSFISEWS 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 848532 849824 - MELO3C023285.2.1 Cme11g00099 340762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00099 237 MobiDBLite consensus disorder prediction 214 237 - -
Cme11g00099 237 SUPERFAMILY Trimeric LpxA-like enzymes 20 211 IPR011004 -
Cme11g00099 237 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 168 196 IPR018357 GO:0016740
Cme11g00099 237 CDD LbH_SAT 106 205 IPR045304 -
Cme11g00099 237 Gene3D serine acetyltransferase, domain 1 13 94 IPR042122 -
Cme11g00099 237 PANTHER SERINE ACETYLTRANSFERASE 17 90 - -
Cme11g00099 237 PANTHER SERINE ACETYLTRANSFERASE 91 237 - -
Cme11g00099 237 Gene3D Hexapeptide repeat proteins 109 228 - -
Cme11g00099 237 Pfam Serine acetyltransferase, N-terminal 16 91 IPR010493 GO:0005737|GO:0006535|GO:0009001
Cme11g00099 237 SMART SATase_N_2_a 16 100 IPR010493 GO:0005737|GO:0006535|GO:0009001
Cme11g00099 237 Pfam Bacterial transferase hexapeptide (six repeats) 159 192 IPR001451 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00099 K00640 cysE; serine O-acetyltransferase [EC:2.3.1.30] - csv:101214580 371.703
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme08g00989 Cme11g00099 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00264 Cme-Chr4:2103684 Cme11g00099 Cme-Chr11:848532 1.03E-137 dispersed
Cme08g00989 Cme-Chr8:6465462 Cme11g00099 Cme-Chr11:848532 1.88E-60 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1179 . . Bda04g00218 . . . . . . . . Cma07g00388 . Car07g00341 . Cpe19g00894 . . . . . . . . Cla01g02032 Cam01g2138 Cec04g1795 Cco04g1861 Clacu01g2154 Cmu01g2030 Cre04g1705 Cone6ag0020 Cone9ag0019 Cone14ag1210 Cone15ag1229 Lsi01g00537 . . Cme08g00989 Blo05g00679 . . . . Bpe06g00157 . . . . Cmo07g00382 . . . . . . Bhi10g02361 . . . . . . Cla02g00088 Cam02g0095 Cec02g0096 Cco02g0088 Clacu02g0092 Cmu02g0087 Cre02g0426 Lsi10g00685 Csa06g03394 Chy02g00512 Cme11g00099
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001381 4 9 3 1 3 1 3 2 2 1 1 1 2 3 2 3 1 6 3 2 2 2 1 2 2 2 2 3 3 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00099 Cme_Chr11 FPKM 11.938255 13.657562 31.410379 32.891712 30.499319 32.833385 30.477682 32.597576 35.194473 32.646122