Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00109 ATGGCTTCCATTTCCTCTTCCTCTCACGACTCTGCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCTGACGAAGTCAAGCGGCATTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCTCCTCCGCCCCTAGAACCTCCAGTAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTCCATTAA 333 51.05 MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 988825 991215 + MELO3C023292.2.1 Cme11g00109 340772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00109 110 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 6 95 IPR044636 GO:0003700
Cme11g00109 110 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 6 95 - -
Cme11g00109 110 Gene3D - 6 76 - -
Cme11g00109 110 MobiDBLite consensus disorder prediction 76 100 - -
Cme11g00109 110 MobiDBLite consensus disorder prediction 74 110 - -
Cme11g00109 110 SUPERFAMILY Homeodomain-like 14 71 IPR009057 -
Cme11g00109 110 ProSiteProfiles Myb-like domain profile. 8 63 IPR001005 -
Cme11g00109 110 SMART sant 12 65 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00109 - - - csv:101211285 181.03
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme08g00942 Cme11g00109 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00564 Cme-Chr4:5062698 Cme11g00109 Cme-Chr11:988825 6.93E-28 dispersed
Cme01g01399 Cme-Chr1:17386423 Cme11g00109 Cme-Chr11:988825 1.01E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1130 . . . . . . . . . . Cma03g00677 . Car03g00625 . Sed10g1012 . . Bhi03g00847 Tan03g2093 Cmetu04g2856 . Hepe04g1602 . . Cla01g01988 Cam01g2086 Cec04g1743 Cco04g1808 . Cmu01g1980 Cre04g1657 . . . . . . . Cme08g00942 . . . . . Bpe06g00334 . . . . . . . . . . . Bhi10g02362 . . . . . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 . Csa06g03340 . Cme11g00109
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00109 Cme_Chr11 FPKM 18.6625 19.624182 31.518595 30.546762 50.662739 27.037537 45.197346 13.333687 11.053638 12.541733