Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00114 CTCTCTCTCTCTACTTTCCTTCAACAACAACAAAACACACCACAAGACTACTTACCTCAATATCAATTAATCTTCTTTGGGGTGCCGGCCGGTGTCATGTTCAAGTCGGAGATGACGGTGTCGGCTCGTTTTAAACGACAGAGAACACACCCTGACACTCTGAGCTTGTCTTCGGTATCGACTCCGGCAAGTCGGGTCGATCATTTTGAAGATTTAGTTGCACCTGGAGGTTGGCCTGAGTTGGCTAAGTACGAGATCTCCTCTAAACAGTTTCGAACCAATCCGATGTATTCTTCCCGAGTAAAGGCGAACTCGACTGTCGAGGGAGAGATTATTCCGAAAAAGATCAGAAAGGGAAAAACCAAAGAAACGAAATCGAAATTAGATAAAGATCAGAACAATAACAATGTTGAATGGGAGAAGAATGGAAAAAATGACAAGTTAGAGAAGAAAATGAAAGAAAAGGTTGAAGAAGATGAAGAATCAAAGATTACTGAGGAAACAGAGAGATGGAAAAAACACAATAATAATTCAAAAGCAAATTCTTCAGAAGAAATTAAAAAATTGGATTATGTTCATGTTCGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAAAGAATGAAGTATTTGCAAAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCAATGAAAGTGGCTGCTCTAAATCACAGAGTTGATTTCATCAATGTTGATGACCTCTTGGCCAAACAGATGTTTTCGACTATAACGGGCGACAATTGTTCATCGTACGATAATCAATTTGGAATAATGGGTTCAAGCTCTCTAGCAATTCCACAAACTCCATTGATCAACAACAACTTGTCTTCAATTACTCAATTTGAAGTGTCTTCAACATGGGGAGGTGAATTACAAAGATTTGAAGAAGGTGGAGGGGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCTCACCAATGTTCTGTCATCGAAGATGAAAATGAAACATTGTTTATGGACCACAAACTTCTTCTTCCATTTTAA 1131 39.26 LSLSTFLQQQQNTPQDYLPQYQLIFFGVPAGVMFKSEMTVSARFKRQRTHPDTLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKQFRTNPMYSSRVKANSTVEGEIIPKKIRKGKTKETKSKLDKDQNNNNVEWEKNGKNDKLEKKMKEKVEEDEESKITEETERWKKHNNNSKANSSEEIKKLDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQMFSTITGDNCSSYDNQFGIMGSSSLAIPQTPLINNNLSSITQFEVSSTWGGELQRFEEGGGGPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLPF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1054206 1057302 + MELO3C023299.2.1 Cme11g00114 340777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00114 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 250 IPR011598 GO:0046983
Cme11g00114 376 SMART finulus 206 256 IPR011598 GO:0046983
Cme11g00114 376 PANTHER TRANSCRIPTION FACTOR BHLH74 35 368 - -
Cme11g00114 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 198 270 IPR036638 GO:0046983
Cme11g00114 376 Coils Coil 247 267 - -
Cme11g00114 376 MobiDBLite consensus disorder prediction 116 183 - -
Cme11g00114 376 CDD bHLH_AtBPE_like 190 276 - -
Cme11g00114 376 Gene3D - 197 272 IPR036638 GO:0046983
Cme11g00114 376 Pfam Helix-loop-helix DNA-binding domain 204 251 IPR011598 GO:0046983
Cme11g00114 376 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 35 368 IPR024097 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00258 Cme-Chr7:1678327 Cme11g00114 Cme-Chr11:1054206 1.38E-42 dispersed
Cme10g00327 Cme-Chr10:2169290 Cme11g00114 Cme-Chr11:1054206 1.62E-41 dispersed
Cme11g00114 Cme-Chr11:1054206 Cme12g01565 Cme-Chr12:23037307 4.04E-39 dispersed
Cme04g02213 Cme-Chr4:29332493 Cme11g00114 Cme-Chr11:1054206 1.32E-34 transposed
Cme01g01389 Cme-Chr1:17299178 Cme11g00114 Cme-Chr11:1054206 4.37E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42125 PF00010 HLH 3.10E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00114 - - csv:101216346 502.671