Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00114 | CTCTCTCTCTCTACTTTCCTTCAACAACAACAAAACACACCACAAGACTACTTACCTCAATATCAATTAATCTTCTTTGGGGTGCCGGCCGGTGTCATGTTCAAGTCGGAGATGACGGTGTCGGCTCGTTTTAAACGACAGAGAACACACCCTGACACTCTGAGCTTGTCTTCGGTATCGACTCCGGCAAGTCGGGTCGATCATTTTGAAGATTTAGTTGCACCTGGAGGTTGGCCTGAGTTGGCTAAGTACGAGATCTCCTCTAAACAGTTTCGAACCAATCCGATGTATTCTTCCCGAGTAAAGGCGAACTCGACTGTCGAGGGAGAGATTATTCCGAAAAAGATCAGAAAGGGAAAAACCAAAGAAACGAAATCGAAATTAGATAAAGATCAGAACAATAACAATGTTGAATGGGAGAAGAATGGAAAAAATGACAAGTTAGAGAAGAAAATGAAAGAAAAGGTTGAAGAAGATGAAGAATCAAAGATTACTGAGGAAACAGAGAGATGGAAAAAACACAATAATAATTCAAAAGCAAATTCTTCAGAAGAAATTAAAAAATTGGATTATGTTCATGTTCGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAAAGAATGAAGTATTTGCAAAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCAATGAAAGTGGCTGCTCTAAATCACAGAGTTGATTTCATCAATGTTGATGACCTCTTGGCCAAACAGATGTTTTCGACTATAACGGGCGACAATTGTTCATCGTACGATAATCAATTTGGAATAATGGGTTCAAGCTCTCTAGCAATTCCACAAACTCCATTGATCAACAACAACTTGTCTTCAATTACTCAATTTGAAGTGTCTTCAACATGGGGAGGTGAATTACAAAGATTTGAAGAAGGTGGAGGGGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCTCACCAATGTTCTGTCATCGAAGATGAAAATGAAACATTGTTTATGGACCACAAACTTCTTCTTCCATTTTAA | 1131 | 39.26 | LSLSTFLQQQQNTPQDYLPQYQLIFFGVPAGVMFKSEMTVSARFKRQRTHPDTLSLSSVSTPASRVDHFEDLVAPGGWPELAKYEISSKQFRTNPMYSSRVKANSTVEGEIIPKKIRKGKTKETKSKLDKDQNNNNVEWEKNGKNDKLEKKMKEKVEEDEESKITEETERWKKHNNNSKANSSEEIKKLDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQMFSTITGDNCSSYDNQFGIMGSSSLAIPQTPLINNNLSSITQFEVSSTWGGELQRFEEGGGGPPLLSPSSFLSHQCSVIEDENETLFMDHKLLLPF | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1054206 | 1057302 | + | MELO3C023299.2.1 | Cme11g00114 | 340777 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00114 | 376 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 200 | 250 | IPR011598 | GO:0046983 | |
Cme11g00114 | 376 | SMART | finulus | 206 | 256 | IPR011598 | GO:0046983 | |
Cme11g00114 | 376 | PANTHER | TRANSCRIPTION FACTOR BHLH74 | 35 | 368 | - | - | |
Cme11g00114 | 376 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 198 | 270 | IPR036638 | GO:0046983 | |
Cme11g00114 | 376 | Coils | Coil | 247 | 267 | - | - | |
Cme11g00114 | 376 | MobiDBLite | consensus disorder prediction | 116 | 183 | - | - | |
Cme11g00114 | 376 | CDD | bHLH_AtBPE_like | 190 | 276 | - | - | |
Cme11g00114 | 376 | Gene3D | - | 197 | 272 | IPR036638 | GO:0046983 | |
Cme11g00114 | 376 | Pfam | Helix-loop-helix DNA-binding domain | 204 | 251 | IPR011598 | GO:0046983 | |
Cme11g00114 | 376 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 35 | 368 | IPR024097 | GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme07g00258 | Cme-Chr7:1678327 | Cme11g00114 | Cme-Chr11:1054206 | 1.38E-42 | dispersed | |
Cme10g00327 | Cme-Chr10:2169290 | Cme11g00114 | Cme-Chr11:1054206 | 1.62E-41 | dispersed | |
Cme11g00114 | Cme-Chr11:1054206 | Cme12g01565 | Cme-Chr12:23037307 | 4.04E-39 | dispersed | |
Cme04g02213 | Cme-Chr4:29332493 | Cme11g00114 | Cme-Chr11:1054206 | 1.32E-34 | transposed | |
Cme01g01389 | Cme-Chr1:17299178 | Cme11g00114 | Cme-Chr11:1054206 | 4.37E-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42125 | PF00010 | HLH | 3.10E-06 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00114 | - | - | csv:101216346 | 502.671 |