Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00120 ATGAATGGTCCTAGAGATAAGAGAACAGCAAGGCTGATAAGAGTGGATGGATCAGGAAATGGAGACTTCAAGAAAATTCAACAAGCAATTGATTCTGTTCCTTCTCAAAACAATGAACTCGTTTTCATTTGGGTTAAGCCTGGAACTTACAGAGAGAAAATAGTGGTTCCGGAGGACAAGCCATACATAACAATAAGCGGCAGCAAGGCCTCCGATACAATCATCACATGGAACCAAGGAAGAGATTTACTTCAATCTCCGGTCGTATCTATCTTTGCTTCGGACTTTGTCGGTCGTTTTCTGACCATCGAAAACACCTTTGGCACCTCTGGCATTGCGGTGGCTCTAAGGGTTTCCGCCGATAGAGCCGCCTTTTACGGCTGCCGGATCATCTCCTTTCAAGATACCCTTTTGGACGACTCTGGAAGACATTACTTCAATAATTGTTACATCGAAGGAGCCACCGATTTCATTTGCGGAAACGCCGCTTCTCTCTATGAGAGATGCCATTTGCATTCGACGTCGGATAGAGGTGGGGCGATGACAGCACAACATCGGAATACGGCGGAGGAAAACACAGGGTTCGTGTTCTTGGGAGGAAAAATAACAGGGAGTGGTTCCATGTTTCTTGGACGGCCATGGGGGGATTTCTCTAAAGTTGTGTTTGGCTACACTTACATGTCCAATGTTGTTGAACCTGAGGGTTGGAATGATTGGGGAGATCCAACCAAGCAAAGAACGGTGTCGTACGGGGAATACAAATGTTATGGGCCCGGAGCAAACAGAGCCAAAAGAGTGGTATGGTCACGTAGTTTGTCGACAGATGAGGCTACAAAACTCTTCACCAAAGACATCATTGGAGGTCGAGCTTGGCTTCGACCTGCACCATCTCATTTCAAAACGCACTAA 909 46.42 MNGPRDKRTARLIRVDGSGNGDFKKIQQAIDSVPSQNNELVFIWVKPGTYREKIVVPEDKPYITISGSKASDTIITWNQGRDLLQSPVVSIFASDFVGRFLTIENTFGTSGIAVALRVSADRAAFYGCRIISFQDTLLDDSGRHYFNNCYIEGATDFICGNAASLYERCHLHSTSDRGGAMTAQHRNTAEENTGFVFLGGKITGSGSMFLGRPWGDFSKVVFGYTYMSNVVEPEGWNDWGDPTKQRTVSYGEYKCYGPGANRAKRVVWSRSLSTDEATKLFTKDIIGGRAWLRPAPSHFKTH 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1132774 1136327 + MELO3C023302.2.1 Cme11g00120 340783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00120 302 Gene3D - 7 301 IPR012334 -
Cme11g00120 302 SUPERFAMILY Pectin lyase-like 9 299 IPR011050 -
Cme11g00120 302 PANTHER PECTINESTERASE 11-RELATED 7 294 - -
Cme11g00120 302 Pfam Pectinesterase 16 283 IPR000070 GO:0030599|GO:0042545
Cme11g00120 302 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00120 K01051 E3.1.1.11; pectinesterase [EC:3.1.1.11] - csv:101215864 592.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01944 Cme-Chr3:27444958 Cme11g00120 Cme-Chr11:1132774 4.49E-136 dispersed
Cme09g00244 Cme-Chr9:1849477 Cme11g00120 Cme-Chr11:1132774 5.51E-79 dispersed
Cme09g01616 Cme-Chr9:20928399 Cme11g00120 Cme-Chr11:1132774 4.75E-82 dispersed
Cme11g00120 Cme-Chr11:1132774 Cme02g00333 Cme-Chr2:2731403 5.61E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g375 . . . . . . . . . . Cma02g00394 . Car02g00256 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00375 . Chy11g00374 . . . . . . . . . Sed05g3617 . . . . . . . Cpe05g01263 Bhi10g02000 Tan05g1298 Cmetu11g1012 . Hepe08g1012 . . . . . . . . . . Csa02g01264 . Cme11g00120
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003216 0 2 0 0 0 2 2 2 2 2 1 2 1 2 2 2 2 2 2 2 2 2 2 2 3 1 2 3 2 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00120 Cme_Chr11 FPKM 0.0 0.0 5.733196 4.53495 0.0 0.0 0.679358 0.0 0.0 0.0