Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00122 ATGGCTCAGAAGGTTCTTATCATCGGTGGAACTGGCTACATCGGAAAATTCATAGTACAAGCTAGCGCCAAAGCTGGTCATCCTACCTATGCATTGATCCGCAGGTCTTCCCTCGAAAGCCCCGCCAAGAATCGAATCCTCAATCATTTCAAAAGCTTAGGTGTCAATTTCCTCTTCGGCGATCTCTTTGACAATGAGAGTTTGGTTAAGGCGATTAAGCAGGTTGATGTGGTGATATCAACCCTTGGTGGCCATATGGTTCCCCATCAACATAAGATCCTATCTGCTATCAAGCAAGCTGGCAATGTGAAGAGTTTGTGTGTTTTGGGAATTTTGAGCATTGGAATTTGTGTTCCACAGAGATTCTTTCCTTCTGAGTTCGGTAATGACGCGGATCATATCGATGCAGTGGAGCCAGCGAAATCGATGTATTCTGCAAAGGCTGAATTTCGTAGGGCTGTTGAAGCTGAGGGAATCCCACATACATTTGTGGTATGCAATTTTTTCGATGGTTACTTTCTTAGCAACTTGTCTCAGCCGGATGCAAGCGTCCCACCTAGAGACAAAGTCGTTATCTTAGGAGATGGAACTCCCAAAGTCATTTACAACAAGGAAGAAGACGTTGGAACGTACACAATCCGAGCGATAGATGATCCAAGAACCCTCAACAAAATCATGTACCTTAGGCCCCCAGCCAACATCTACTCAACCAATGATCTCGTGTCTCTTTGGGAGAGAAAAATTGGCAAGAGTCTTAAAAGAATCTATGTACCAGAGGAGGAAGTATTGAAGAAAATCCGAGAGACTTCATATCCACTTAATATAGAGTTGGCACTATGTCACACTGCTCAAGTGAAGGGATCTCAAACTAATTTTGATATCGAACCATCTTTTGGAGTTGAAGCTTCAGCATTGTACCCAGATGTTCGATATACAACTGTGGAAGAATACCTTGACCAGTTTGTCTAA 969 43.24 MAQKVLIIGGTGYIGKFIVQASAKAGHPTYALIRRSSLESPAKNRILNHFKSLGVNFLFGDLFDNESLVKAIKQVDVVISTLGGHMVPHQHKILSAIKQAGNVKSLCVLGILSIGICVPQRFFPSEFGNDADHIDAVEPAKSMYSAKAEFRRAVEAEGIPHTFVVCNFFDGYFLSNLSQPDASVPPRDKVVILGDGTPKVIYNKEEDVGTYTIRAIDDPRTLNKIMYLRPPANIYSTNDLVSLWERKIGKSLKRIYVPEEEVLKKIRETSYPLNIELALCHTAQVKGSQTNFDIEPSFGVEASALYPDVRYTTVEEYLDQFV 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1158139 1160696 + MELO3C023304.2.1 Cme11g00122 340785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00122 322 PANTHER PINORESINOL REDUCTASE-RELATED 3 322 - -
Cme11g00122 322 Gene3D - 4 308 - -
Cme11g00122 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 281 IPR036291 -
Cme11g00122 322 PANTHER PHENYLCOUMARAN BENZYLIC ETHER REDUCTASE 1 3 322 - -
Cme11g00122 322 CDD PCBER_SDR_a 4 317 IPR045312 GO:0016491
Cme11g00122 322 Pfam NmrA-like family 5 285 IPR008030 -
Cme11g00122 322 Gene3D - 168 318 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00122 K23050 PCBER1; phenylcoumaran benzylic ether reductase [EC:1.3.1.-] - csv:101209800 595.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00121 Cme-Chr11:1152522 Cme11g00122 Cme-Chr11:1158139 5.47E-107 tandem
Cme11g00122 Cme-Chr11:1158139 Cme11g00123 Cme-Chr11:1163731 1.29E-163 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g369 . . . . . . . . . . . Cma20g00845 . . Sed04g3918 . . Bhi05g01243 Tan02g0785 Cmetu01g0437 . Hepe02g0491 . . . . . . . . . . . . . Lsi10g00377 . . . . . . . . . . . Sed05g3616 . . . . . . . . Bhi10g01997 Tan05g1295 Cmetu11g0943 . Hepe08g1010 . . . . . . . . . . Csa02g01266 . Cme11g00122
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00122 Cme_Chr11 FPKM 12.760472 13.598395 24.238253 24.067175 13.146343 11.499756 11.916129 25.109621 26.082264 23.563404