Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00124 ATGGGCAAAGTCAAGGGAAAGCATCGTTTGGACAAGTACTATCGCCTTGCTAAAGAGCATGGCTATCGCTCTCGTGCCTCATGGAAACTCGCTCAGCTCGATTCCAAATACAACTTCCTCCGTTCTTCCCATGCCGTCCTCGATCTTTGTGCCGCCCCTGGTGGTTGGATGCAAGTCGCCGTCGAGCGGGTTCCTGTCGGTAGTCTCGTCGTCGGTGTTGATTTGGTTCCCATTGCTCCCGTCCGCGGTGCTGTCGCTATCGAGCAAGATATCACCAAGCCGGAGTGTAAAGCCAGGCTCAAGAAGATTATGAGCGAAAAGGGGTGCGCTGCTTTTGATTTGATCTTGCACGATGGTTCGCCCAATGTAGGTGGGGCTTGGGCGCAGGAGGCTATGTCTCAGAATTCGTTGGTTATTGACTCTGTCAGATTAGCTACTCAGTTGTTGGCTCCGAAGGGTACATTTGTTACCAAGGTTTTTAGGTCACAAGATTACAGTTCTGTCCTATATTGTATCAAGCAGTTATTTGAAAAGGTTGAGGTTGACAAACCAGCAGCAAGTCGATCTGCATCTGCAGAAATATATATTTTGGGTATTAGGTATAAGGCTCCTGCAAAGATTGATCCTCGTCTCCTTGATGTGAAACACCTCTTTCAAGGATCTGTAGAACCCCAACAGAAGGTTGTGGATGTACTTAGAGGAACAAAACAAAAGAGACATCGTGATGGATATGAAGATGGTGCTACGATTCTCCGGAAAGTGTCTTCTGCTTCTAATTTCATCTGGTCAGATTCTCCTCTTGAGATCTTAGGAACTGTGACTTGTATAACTTTTGATGAACCTGATTCTTTGCCGATTAAGGATCATGATTTAACAACCGAAGAGGTTAAGGCACTTTGTGATGACTTGCGTGTCTTGGGAAAGCAAGATTTTAAACATCTGCTGAAATGGCGATTGCACATAAGAAAGGCCTTATCTCCTGATCAAAAGGCTACATCCACTTCAGTTAAAGATGTTGAAAATGAGGTAAAGCAGGATGAAGACGATAAATTACTAAATGAGATGGAGGAGCTTGCATATGCTATGGAGCGGAAGAAGAAAAGGACAAAAAAGCTACTTGCGAAAAGGAAAGCTAAGGACAAAGCTAGGAAAGCAATGGGGACACAAATAGACGTCATGGAAGAGGGTTATGTTGATCATGAGTTATTCTCTCTTTCCAACATCAAGGGTAAGAATGATTTAAAAGCTGTGGATTCAACTGAATATGATGATGACAATGGTGAGTTGGGAGAACATGAAAATGATGTAACCAAAGAGGAAAACCGTGGGTCTTCTGCTAGTGATATTGACTCTGATGAAGAGCGCAGAAGGTATGATGAACATATGGAGGAATTGTTGGATCAGGCTTATGAAAGCTTTGTTTCCAGAAAGGAAGGTAGTGCAAAGCGGCGGAAACGTGTAAAAAATGCTTATTCTGATAATGCCGAGCTGCTTGAGGAAGATGAGAATGGTGGCGATGGTATTCAGTCTGATTATGACTCGGACGAAAATATTGTAGATGCGGATAAAAATCCACTGATGGTATCTCTTGATGATGGTGCCGAGCCAACTCAAGAGGAAATTGCAAGCAAGTGGTTCAGTCAGGATATTTTTGCTGAAGCAGTAGAGGAGGGAGATTTGAAGGGGTTGGATAGTGATGATGACATGGAGGTTGATGGACCAAAGGAAACTCTTGCCGTCTCCAAAAAAGCCAAGTCAAGTATTTCACAGAATGCGGGAGAGAATTCTAAAATTTCAAGCAATGCAAGAGAATCTAATGAAGTAGACGATGGATTTGAGGTGGTTCCTGCCCCGGCTACAGATTCAAGTGACAGTTCATCCTCTGAAGAATCCGATGATGAAGATCCTGACACAAGGGCTGAGATATTAGCATGTGCAAAGAAGATGCTGAGGAAAAAGCAACGAGAGCAGATTCTTGATGATTCTTACAACAAATACATGTTTGATGATGCAGGCTTGCCCAAGTGGTTTTTGGATGAGGAGCGAAGACATCGTCAACCGATAAAGCCTGTAACCAAAGAGGAGGTCGCCGCGATAAGAGCACAGTTCAAAGAAATTGATGCTCGCCCTGCTAAAAAGGTGGCTGAAGCTAAGGCACGAAAGAAGCGAGTTGCAATGAAGAAGCTCGAGAAGGTTCGCAAGAAGGCAAATGTCATCTCAGACCAGGCTGATATATCGGATCGGTCCAAGAGGAAGATGATAGATCAACTTTACAAAAAAGCCGTACCCCAAAGGCCTAAAAAGGAACTTGTGGTTGCAAAGAAAGGAGTTCAAGTCAGGGTTGGAAAGGGTAAAGTCTTGGTCGATCGGCGTATGAAGAAGGATGCGAGAAAGCATGGAATGAGTAAGCAAGGTAAAGGTTCGAAGAAGGGAAAGAACTCAAAGGCTCCAAGAGCCAAGGGGGGACCTGCGAAGGACTCAAACACTCCAAGAGGTAAGGCAGGATTCACTAAAGCTTCCGGGAAGAAGGGAGGTAGAAAGGGACATTCCAAGAGGTAA 2559 44.43 MGKVKGKHRLDKYYRLAKEHGYRSRASWKLAQLDSKYNFLRSSHAVLDLCAAPGGWMQVAVERVPVGSLVVGVDLVPIAPVRGAVAIEQDITKPECKARLKKIMSEKGCAAFDLILHDGSPNVGGAWAQEAMSQNSLVIDSVRLATQLLAPKGTFVTKVFRSQDYSSVLYCIKQLFEKVEVDKPAASRSASAEIYILGIRYKAPAKIDPRLLDVKHLFQGSVEPQQKVVDVLRGTKQKRHRDGYEDGATILRKVSSASNFIWSDSPLEILGTVTCITFDEPDSLPIKDHDLTTEEVKALCDDLRVLGKQDFKHLLKWRLHIRKALSPDQKATSTSVKDVENEVKQDEDDKLLNEMEELAYAMERKKKRTKKLLAKRKAKDKARKAMGTQIDVMEEGYVDHELFSLSNIKGKNDLKAVDSTEYDDDNGELGEHENDVTKEENRGSSASDIDSDEERRRYDEHMEELLDQAYESFVSRKEGSAKRRKRVKNAYSDNAELLEEDENGGDGIQSDYDSDENIVDADKNPLMVSLDDGAEPTQEEIASKWFSQDIFAEAVEEGDLKGLDSDDDMEVDGPKETLAVSKKAKSSISQNAGENSKISSNARESNEVDDGFEVVPAPATDSSDSSSSEESDDEDPDTRAEILACAKKMLRKKQREQILDDSYNKYMFDDAGLPKWFLDEERRHRQPIKPVTKEEVAAIRAQFKEIDARPAKKVAEAKARKKRVAMKKLEKVRKKANVISDQADISDRSKRKMIDQLYKKAVPQRPKKELVVAKKGVQVRVGKGKVLVDRRMKKDARKHGMSKQGKGSKKGKNSKAPRAKGGPAKDSNTPRGKAGFTKASGKKGGRKGHSKR 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1166599 1172596 - MELO3C023306.2.1 Cme11g00124 340787

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00124 852 MobiDBLite consensus disorder prediction 781 852 - -
Cme11g00124 852 MobiDBLite consensus disorder prediction 582 602 - -
Cme11g00124 852 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Cme11g00124 852 Pfam FtsJ-like methyltransferase 22 198 IPR002877 GO:0008168|GO:0032259
Cme11g00124 852 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Cme11g00124 852 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 806 IPR028589 GO:0008649|GO:0031167
Cme11g00124 852 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Cme11g00124 852 Coils Coil 712 732 - -
Cme11g00124 852 MobiDBLite consensus disorder prediction 557 640 - -
Cme11g00124 852 MobiDBLite consensus disorder prediction 431 471 - -
Cme11g00124 852 MobiDBLite consensus disorder prediction 419 518 - -
Cme11g00124 852 MobiDBLite consensus disorder prediction 496 515 - -
Cme11g00124 852 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
Cme11g00124 852 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 808 - -
Cme11g00124 852 Pfam Spb1 C-terminal domain 607 801 IPR012920 GO:0005634|GO:0006364|GO:0008168
Cme11g00124 852 MobiDBLite consensus disorder prediction 796 816 - -
Cme11g00124 852 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 808 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00124 K14857 SPB1, FTSJ3; AdoMet-dependent rRNA methyltransferase SPB1 [EC:2.1.1.-] - csv:101209556 1495.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02703 Cme-Chr4:32470644 Cme11g00124 Cme-Chr11:1166599 2.90E-31 dispersed
Cme09g00464 Cme-Chr9:4463583 Cme11g00124 Cme-Chr11:1166599 1.37E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g363 Blo02g00806 . . Bda08g00942 . . Bma05g00441 . . . Cma02g00391 . Car02g00254 Car20g00730 . . . . . . . . . . . . . . . . . Cone12ag1158 Cone8ag1207 . . Lsi10g00379 . Chy11g00372 . . . . . . . . . Sed01g0297 Cmo02g00398 Cmo20g00854 . . . . Cpe16g00247 Cpe05g01265 Bhi10g01995 Tan05g1293 Cmetu11g1187 . Hepe08g1009 . . . . . . . . . . Csa02g01268 . Cme11g00124
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007268 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00124 Cme_Chr11 FPKM 7.970238 10.953104 9.65174 6.469955 3.975494 0.0 3.454559 7.117098 7.286019 11.954804