Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00153 ATGCACCATCTATTGTTCCCAGGACTTTATTATGGGAGACGTAAGAGACTAAAATTATCTAGTGATGGAAAAGATCTTTCTAGCAGTGCCACATTTTCTGCCCAAAAAAGTGACACACCGAGACAAAACAAGATGAATAACTCAGCAAAAGTAATTGATTACTCAGATCCATTTGCCATTAATAATTTGATCGAAGGTTTGGATTGTGGTCAGTTTGGAAGTGTCACTAAAGAGATAGAAGCCCTTGTTTCCCGTAAGATGCAAGTTCTCAGTCCTTACATTGCCAAGTATCCTACACTATCAAGTATGTTATTTGATCTGGGGAGAAGTAGAGAGTGTGAAGAAGCAATGAACAATCAAGCTTCGCAGTTGGTTCATAACCTCATAGATTTGGAGGATGATTCTGCTATTGATGTTTGTTCCAACAATGTTGAGAAATCACGATTACCTATTGTAATTATTGATTCTGATGAGGAAGATAGCAAAGAACAGAGGGTTATACATCCTTTTCAAGAGGTTGTGCTGCCTAGACCGCCGGGACAAAGTTTGTTCAAGGACATAGCACTTGTGGATCACCGAACTTCCCGGGATCGCCGAGCTTCAAATGGGGAGGAAGCAACTCCTAATGGTGAAAGTGGAACTATTAATAAGGACAAAGGGGTTTACGTAGGTGTAGAAGAGGATGAGGATGGGGTCAGCGAACAAGCTAACAGTGAGGACGATGGCCTCGGAGATATTTGGAACGATATGCAAATGGCATTAGAATGTTCTAAGGACTTGGATGCCGCTGTAGATTCATCATCTAACCAGCCAACTACGGATGATGTGGACTGTGATCATTCTTTTCTCTTGAAGGATGATCTTGGTTATGTCTGTCGCATTTGTGGAGTTATTGACAGAGGAATCGAGACCATTTTTGAGTTTCAGTACTACAAGGGTAAGAAGAGCACAAGAACATACATATCTGAATCTCGCAACAAAGATTCGGGCAATATAGTTGGAGTTAAAATTTCAGAAGATGATTTGACCGTAACTGAAATTTCTGCACACCCTAGGCATATGAAGCAAATGAAACCTCATCAAATTGAGGGTTTCAATTTTCTTATAAGCAACTTGGTTAGTGACAACCCAGGAGGCTGCATTTTGGCCCACGCTCCCGGATCTGGAAAAACATTTATGATAATCAGTTTCATGCAAAGTTTTTTAGCTAAGTATCCACAGGCTAGACCATTGGTTGTACTTCCCAAAGGAATCTTGGCTACATGGAAAAAGGAGTTTCAGATTTGGCAAGTGGAAGACATTCCACTTTATGATTTCTATTCTGTTAAAGCAGATAATAGGGCTCAACAGCTGACAGTACTGAATCAGTGGGTCGAGCACAAGAGCATTCTGTTCTTAGGATACAAACAATTTTCCACAATCGTCTGCGACGTTGAGACCAGTGCTGCATCAACTGCATGTCAAAATATATTGCTCCAGGTTCCAACAATTCTTATCCTAGATGAGGGGCATACACCAAGAAATGAGAACACTGATACTTTGCAAACTCTTGCTAAAGTTAGAACTCCACGAAAAGTGGTTCTTTCAGGAACCCTATATCAAAATCATGTAAAAGAGGTATTCAATATAGTGAATCTTGTTCGACCAAAGTTTATGAGATCAGAAACTTCTCGACCTATTATCAAACGTATCATGTCTAGAGTAGATATACCTGGTGCGAGGAAGCAGTTCAAAGCTGGTGTGGATGCTGCATTTTATGATCTGGTGGAACATACGCTTCAGAAGGATACAGACTTTAGGAGGAAAGTGAGTGTCATCCATGATTTACGTGAGATGACCAGCAAGATTCTACATTATTATAAAGGAGATTTTCTTGATGAGCTCCCTGGACTGGTTGACTTCACTGTGGTATTAAATCTCACCTCTAAACAGAAGCATGAAGGTGAAAAGGTCAAAAAGTTTAACAGGAAGTTCAAAATAAGCTCTGCTGGTAGTGCTGTTTATTTGCATCCCAAGTTAAATGTTTTTTCAGTTAATGCTACTGTTACGGATGATAAAATAGATGAAGTCATTGATAAGATGGATGTTAGAGATGGAGTGAAGACGAAATTCTTTCTTAATATGCTGAATCTGTGCGCTACTACTGGGGAGAAGCTACTGGTTTTCAGCCAGTACCTTCTTCCTTTGAAATTCATGGAGAGATTGGTTGTGCAGAAGAAGGGTTGGAGTCCAGGAAGAGAAACCTTTATGATATCTGGTGAAACAACTCCAGAGCAACGGGAATGGTCGATGGAACGTTTCAACAACTCGCCTGATGCCCGAGTCTTCTTTGGCTCTATTAAGGCTTGTGGGGAGGGCATATCTTTGGTAGGGGCATCACGTATCATCATCTTGGATGTTCATCTCAATCCCTCAGTGACTCGCCAGGCAATTGGTCGTGCATTCCGTCCCGGTCAAACAAAGAAAGTCTTTGCATATAGATTGGTGGCTGGCGATTCACCTGAAGAGGGAGATCACAGTACTTGTTTCAAGAAGGAATTGATTGCAAAGATGTGGTTTGAATGGAACGAGTATTGTGGCTATCATGACTTTGAAGTAGAAACTGTTGATGTGAAACAATGCGGCGATAATTTTCTAGAAACCCCACTTCTAGGACAAGACGTCAAAGTTCTGTACAGAAGGTAG 2685 40.93 MHHLLFPGLYYGRRKRLKLSSDGKDLSSSATFSAQKSDTPRQNKMNNSAKVIDYSDPFAINNLIEGLDCGQFGSVTKEIEALVSRKMQVLSPYIAKYPTLSSMLFDLGRSRECEEAMNNQASQLVHNLIDLEDDSAIDVCSNNVEKSRLPIVIIDSDEEDSKEQRVIHPFQEVVLPRPPGQSLFKDIALVDHRTSRDRRASNGEEATPNGESGTINKDKGVYVGVEEDEDGVSEQANSEDDGLGDIWNDMQMALECSKDLDAAVDSSSNQPTTDDVDCDHSFLLKDDLGYVCRICGVIDRGIETIFEFQYYKGKKSTRTYISESRNKDSGNIVGVKISEDDLTVTEISAHPRHMKQMKPHQIEGFNFLISNLVSDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDFYSVKADNRAQQLTVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPTILILDEGHTPRNENTDTLQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSETSRPIIKRIMSRVDIPGARKQFKAGVDAAFYDLVEHTLQKDTDFRRKVSVIHDLREMTSKILHYYKGDFLDELPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNVFSVNATVTDDKIDEVIDKMDVRDGVKTKFFLNMLNLCATTGEKLLVFSQYLLPLKFMERLVVQKKGWSPGRETFMISGETTPEQREWSMERFNNSPDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAGDSPEEGDHSTCFKKELIAKMWFEWNEYCGYHDFEVETVDVKQCGDNFLETPLLGQDVKVLYRR 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1640794 1646698 + MELO3C023332.2.1 Cme11g00153 340816

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00153 894 Gene3D - 629 866 IPR027417 -
Cme11g00153 894 Gene3D - 325 577 IPR038718 -
Cme11g00153 894 PANTHER PROTEIN CHROMATIN REMODELING 35 12 894 - -
Cme11g00153 894 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 371 550 IPR014001 -
Cme11g00153 894 SMART helicmild6 730 818 IPR001650 -
Cme11g00153 894 MobiDBLite consensus disorder prediction 22 45 - -
Cme11g00153 894 MobiDBLite consensus disorder prediction 194 220 - -
Cme11g00153 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 856 IPR027417 -
Cme11g00153 894 Pfam Helicase conserved C-terminal domain 707 817 IPR001650 -
Cme11g00153 894 Pfam SNF2-related domain 377 586 IPR000330 GO:0005524|GO:0140658
Cme11g00153 894 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 707 872 IPR001650 -
Cme11g00153 894 SMART ultradead3 353 561 IPR014001 -
Cme11g00153 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 344 556 IPR027417 -
Cme11g00153 894 CDD SF2_C_SNF 685 829 - -
Cme11g00153 894 MobiDBLite consensus disorder prediction 23 45 - -
Cme11g00153 894 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 12 894 IPR044567 GO:0080188
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00153 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:101207775 1705.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g01390 Cme-Chr10:16248829 Cme11g00153 Cme-Chr11:1640794 3.71E-82 dispersed
Cme11g00153 Cme-Chr11:1640794 Cme08g00028 Cme-Chr8:224292 2.31E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g3 . Blo15g00679 Bda06g00991 . . . . Bma12g00550 . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 Sed03g1723 . . Bhi05g01788 Tan02g2021 Cmetu03g0999 . . . . . . . . . . . Cone12ag1169 Cone8ag1217 . . Lsi10g00400 . Chy11g00351 . . Blo13g00542 . . . . . . Sed01g0278 Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01967 Tan05g1260 Cmetu11g0821 . . . . . . . . . . . . Csa02g01291 . Cme11g00153
Vvi3g335 . Blo15g00756 Bda06g01081 . . . . . . . Cma02g00375 Cma20g00824 Car02g00242 Car20g00710 . . . . . . . . . . . . . . . . . . . . . Lsi10g00400 . Chy11g00351 . . . . . . . . . . Cmo02g00382 Cmo20g00835 . . . . Cpe16g00264 Cpe05g01280 Bhi10g01968 . . . Hepe08g0991 . . . . . . . . . . Csa02g01291 . Cme11g00153
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004368 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 2 4 1 3 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42127 PF00176 SNF2_N 1.50E-19 CL0023 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00153 Cme_Chr11 FPKM 27.509895 25.835773 59.022186 53.107491 37.981297 39.247883 33.92778 62.240685 59.727573 53.305817