Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00154 ATGGCAACTTACTTCTCTAGTTCGAATAACGAAAGGGACACTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCATATGAAGAAACAACAATTCTTCCACGAAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCGTTACCATCACAGGCACAAAATGGTTGTGGTCAGATCACGTCGGTTGGAGCAGCAGGAACTACCCAACAGCAGCAAGAGTTTTTATCAAATCTTGGTGGCTCACAAATTGCTGAGCATGATTTCAATACATGGAGAGAGGACCGGAGTGAAATGCTTGGCGCGAACTTGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGTTTATCCCTTACTCTCAGTACACAAATCCCTTCAATCCCCTACAGAAATTCGGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGTGAGGATGGCTGCAGAAATGGTGCATCTAGAGACGAACAGTTGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAAATATCTCAATACAGCATGTCTACTATTGCAAGAACTATGCCCAATTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGGCCTAATAATGAGAGAAACCAGAGTTCACCTGAGCATGAAACTAAAAGTGCAAAGAACGGTGACGCAGGAACCAAAAATGACAGTTCGATGCTCACTGCAAGTGGAACATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCTCATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACTAAGCTTTTATACATGCTGGATGAGGTTGATAGAAGGTACAATCAGTACTATCATCAGATGCAGATTGTGGTGTCGTCCTTTGATGTGATAGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACCATATCCCGTCATTTTCGGTGCTTGCGTGATGCAATAGCTGGTCAAGTCAGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAATTCTGGAAGTGACAAGGGAGTTGGAATCACTCGTCTTCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCACTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTTTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGCGTAGACATGGACTCTATATCATCATCTGAAAATGCTGGGAAGGCAACAAAAGGAGATAACAAGACCTTTGAGGATGATAAAGAGGAGGATCTACAACAAAGTGCAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGATATTATTGACTTAAAATCTGATCAAGTCTCGAATCTCGGAAATTCATGTTCCAACAGAGTAGCTAGTTTCCAAAATGGAGCTCACATTGAAGCTCGAAACGAGCTGGCAAAGCCGAACGATGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGATTTATGGCCGCTGCTGCCGCCTATCACATGTCTGAATTGGGAAGATTTGGAACGGTTGGCGGGGTGTCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCCTACCATTGCCTGCTGGGACACATCATGGTTTTGCAACCATGAGAGGAGACGATATGTACAATGCTGCAGCGTCTTCCCTTGGGGAAACGGTTCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCCCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2028 44.87 MATYFSSSNNERDTTPILYSRGSLLGSYEETTILPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWREDRSEMLGANLMRGPTNVLHGGQNLQGQGLSLTLSTQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQLRNGENLPPNFQELAKGEISQYSMSTIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERNQSSPEHETKSAKNGDAGTKNDSSMLTASGTSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGSDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAGKATKGDNKTFEDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSCSNRVASFQNGAHIEARNELAKPNDELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGLPLPAGTHHGFATMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGPSHLYHDFVV 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1651284 1656057 - MELO3C023333.2.1 Cme11g00154 340817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00154 675 MobiDBLite consensus disorder prediction 247 279 - -
Cme11g00154 675 MobiDBLite consensus disorder prediction 225 246 - -
Cme11g00154 675 SMART prehox3 195 350 IPR006563 -
Cme11g00154 675 ProSiteProfiles 'Homeobox' domain profile. 397 460 IPR001356 GO:0003677
Cme11g00154 675 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 70 623 - -
Cme11g00154 675 SUPERFAMILY Homeodomain-like 401 468 IPR009057 -
Cme11g00154 675 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 70 623 - -
Cme11g00154 675 Coils Coil 282 302 - -
Cme11g00154 675 MobiDBLite consensus disorder prediction 144 161 - -
Cme11g00154 675 Gene3D - 395 473 - -
Cme11g00154 675 Pfam Homeobox KN domain 417 456 IPR008422 GO:0003677|GO:0006355
Cme11g00154 675 MobiDBLite consensus disorder prediction 225 279 - -
Cme11g00154 675 MobiDBLite consensus disorder prediction 144 181 - -
Cme11g00154 675 MobiDBLite consensus disorder prediction 477 511 - -
Cme11g00154 675 SMART HOX_1 400 464 IPR001356 GO:0003677
Cme11g00154 675 Pfam Associated with HOX 202 349 IPR006563 -
Cme11g00154 675 MobiDBLite consensus disorder prediction 489 504 - -
Cme11g00154 675 CDD homeodomain 400 461 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02615 Cme-Chr1:33782094 Cme11g00154 Cme-Chr11:1651284 1.67E-101 dispersed
Cme05g00241 Cme-Chr5:1763777 Cme11g00154 Cme-Chr11:1651284 6.26E-94 dispersed
Cme11g00154 Cme-Chr11:1651284 Cme11g00313 Cme-Chr11:3310166 3.31E-85 dispersed
Cme11g00154 Cme-Chr11:1651284 Cme04g02323 Cme-Chr4:30173085 4.14E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42128 PF07526 POX 2.30E-51 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00154 - - csv:101205137 1304.66