Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00162 | ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCCCCGCCTGTGACCGCCAAGTCCACCGAGCCAACAAGCTCGCCAGTAAACACAGCCGTTTCTCTCTCCTCCATTCCGCCGCCTCCGCCGCTGCTACTTCACAGCCGTTATGCGATGTCTGCCAAATCCAGCGAGCGTTTCTGTTCTGTCGGGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCCCAATTCATGACACCAGCGAACACACCCAGAAGCACAGCCGGTTTCTTCTCACCGGCGTGAAGGTGTCCCCGTCGACGGCGACTTCTTCTTCTTGTTCCTCCTCGGTGGGAAGCGGCGGCGAGGAAAATGAAGGGTTGTTGAAGAAATGCTCGAGGAAGAGGAGCAAAATGGGGTTTAGCAAAGGATTGGTAATATCAGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTTGAGGACTTTCTTGATTCTTCATCTTCCCCACATATTCTTTTGTAA | 537 | 52.14 | MKIRCDVCDKEEASVFCPSDEAALCPACDRQVHRANKLASKHSRFSLLHSAASAAATSQPLCDVCQIQRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSTATSSSCSSSVGSGGEENEGLLKKCSRKRSKMGFSKGLVISEYLESLPGWCVEDFLDSSSSPHILL | 178 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1739205 | 1739758 | + | MELO3C023341.2.1 | Cme11g00162 | 340825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00162 | 178 | ProSiteProfiles | Zinc finger B-box type profile. | 57 | 104 | IPR000315 | GO:0008270 | |
Cme11g00162 | 178 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cme11g00162 | 178 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cme11g00162 | 178 | SMART | bboxneu5 | 57 | 104 | IPR000315 | GO:0008270 | |
Cme11g00162 | 178 | CDD | Bbox1_BBX-like | 61 | 104 | - | - | |
Cme11g00162 | 178 | Gene3D | Classic Zinc Finger | 1 | 105 | - | - | |
Cme11g00162 | 178 | Pfam | B-box zinc finger | 3 | 44 | IPR000315 | GO:0008270 | |
Cme11g00162 | 178 | Pfam | B-box zinc finger | 59 | 100 | IPR000315 | GO:0008270 | |
Cme11g00162 | 178 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 173 | - | - | |
Cme11g00162 | 178 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Cme11g00162 | 178 | PANTHER | B-BOX ZINC FINGER PROTEIN 21 | 1 | 173 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme01g01353 | Cme11g00162 | CCT | |
Cme01g01353 | Cme11g00162 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme03g01907 | Cme-Chr3:27183411 | Cme11g00162 | Cme-Chr11:1739205 | 8.17E-47 | dispersed | |
Cme11g00162 | Cme-Chr11:1739205 | Cme11g02456 | Cme-Chr11:31278052 | 1.30E-35 | dispersed | |
Cme01g01353 | Cme-Chr1:16917918 | Cme11g00162 | Cme-Chr11:1739205 | 4.26E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42129 | PF00643 | zf-B_box | 2.90E-06 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00162 | - | - | csv:101207039 | 286.96 |