Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00162 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCCCCGCCTGTGACCGCCAAGTCCACCGAGCCAACAAGCTCGCCAGTAAACACAGCCGTTTCTCTCTCCTCCATTCCGCCGCCTCCGCCGCTGCTACTTCACAGCCGTTATGCGATGTCTGCCAAATCCAGCGAGCGTTTCTGTTCTGTCGGGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCCCAATTCATGACACCAGCGAACACACCCAGAAGCACAGCCGGTTTCTTCTCACCGGCGTGAAGGTGTCCCCGTCGACGGCGACTTCTTCTTCTTGTTCCTCCTCGGTGGGAAGCGGCGGCGAGGAAAATGAAGGGTTGTTGAAGAAATGCTCGAGGAAGAGGAGCAAAATGGGGTTTAGCAAAGGATTGGTAATATCAGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTTGAGGACTTTCTTGATTCTTCATCTTCCCCACATATTCTTTTGTAA 537 52.14 MKIRCDVCDKEEASVFCPSDEAALCPACDRQVHRANKLASKHSRFSLLHSAASAAATSQPLCDVCQIQRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSTATSSSCSSSVGSGGEENEGLLKKCSRKRSKMGFSKGLVISEYLESLPGWCVEDFLDSSSSPHILL 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1739205 1739758 + MELO3C023341.2.1 Cme11g00162 340825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00162 178 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270
Cme11g00162 178 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme11g00162 178 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme11g00162 178 SMART bboxneu5 57 104 IPR000315 GO:0008270
Cme11g00162 178 CDD Bbox1_BBX-like 61 104 - -
Cme11g00162 178 Gene3D Classic Zinc Finger 1 105 - -
Cme11g00162 178 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cme11g00162 178 Pfam B-box zinc finger 59 100 IPR000315 GO:0008270
Cme11g00162 178 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 173 - -
Cme11g00162 178 CDD Bbox1_BBX-like 5 47 - -
Cme11g00162 178 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 173 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01353 Cme11g00162 CCT
Cme01g01353 Cme11g00162 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01907 Cme-Chr3:27183411 Cme11g00162 Cme-Chr11:1739205 8.17E-47 dispersed
Cme11g00162 Cme-Chr11:1739205 Cme11g02456 Cme-Chr11:31278052 1.30E-35 dispersed
Cme01g01353 Cme-Chr1:16917918 Cme11g00162 Cme-Chr11:1739205 4.26E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42129 PF00643 zf-B_box 2.90E-06 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00162 - - csv:101207039 286.96