Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00162 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCCCCGCCTGTGACCGCCAAGTCCACCGAGCCAACAAGCTCGCCAGTAAACACAGCCGTTTCTCTCTCCTCCATTCCGCCGCCTCCGCCGCTGCTACTTCACAGCCGTTATGCGATGTCTGCCAAATCCAGCGAGCGTTTCTGTTCTGTCGGGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCCCAATTCATGACACCAGCGAACACACCCAGAAGCACAGCCGGTTTCTTCTCACCGGCGTGAAGGTGTCCCCGTCGACGGCGACTTCTTCTTCTTGTTCCTCCTCGGTGGGAAGCGGCGGCGAGGAAAATGAAGGGTTGTTGAAGAAATGCTCGAGGAAGAGGAGCAAAATGGGGTTTAGCAAAGGATTGGTAATATCAGAGTATTTGGAGAGTTTGCCTGGTTGGTGTGTTGAGGACTTTCTTGATTCTTCATCTTCCCCACATATTCTTTTGTAA 537 52.14 MKIRCDVCDKEEASVFCPSDEAALCPACDRQVHRANKLASKHSRFSLLHSAASAAATSQPLCDVCQIQRAFLFCREDRAILCRECDIPIHDTSEHTQKHSRFLLTGVKVSPSTATSSSCSSSVGSGGEENEGLLKKCSRKRSKMGFSKGLVISEYLESLPGWCVEDFLDSSSSPHILL 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1739205 1739758 + MELO3C023341.2.1 Cme11g00162 340825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00162 178 ProSiteProfiles Zinc finger B-box type profile. 57 104 IPR000315 GO:0008270
Cme11g00162 178 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cme11g00162 178 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cme11g00162 178 SMART bboxneu5 57 104 IPR000315 GO:0008270
Cme11g00162 178 CDD Bbox1_BBX-like 61 104 - -
Cme11g00162 178 Gene3D Classic Zinc Finger 1 105 - -
Cme11g00162 178 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Cme11g00162 178 Pfam B-box zinc finger 59 100 IPR000315 GO:0008270
Cme11g00162 178 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 173 - -
Cme11g00162 178 CDD Bbox1_BBX-like 5 47 - -
Cme11g00162 178 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00162 - - - csv:101207039 286.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01353 Cme11g00162 CCT
Cme01g01353 Cme11g00162 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01907 Cme-Chr3:27183411 Cme11g00162 Cme-Chr11:1739205 8.17E-47 dispersed
Cme11g00162 Cme-Chr11:1739205 Cme11g02456 Cme-Chr11:31278052 1.30E-35 dispersed
Cme01g01353 Cme-Chr1:16917918 Cme11g00162 Cme-Chr11:1739205 4.26E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01557 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.4e-82 303.5
Cme02g01521 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.4e-56 217.2
Cme02g01521 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.4 3.6e-70 262.3
Cme02g01520 CCT 15 364 C2C2-CO-like Transcription Factor Family AT5G57660 51.9 6.1e-62 235.0
Cme03g01557 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.3e-53 206.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 8.1e-89 324.3
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 1.2e-87 320.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme03g01907 . 1 209 C2C2-CO-like Transcription Factor Family AT1G75540 51.7 2.0e-54 209.9
Cme01g01353 CCT,ECH 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 2.8e-48 189.5
Cme11g00162 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 54.5 3.7e-45 179.1
Cme07g01351 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 51.1 5.5e-78 288.1
Cme08g00909 . 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 81.7 3.8e-49 191.4
Cme08g00909 . 1 136 C2C2-CO-like Transcription Factor Family AT4G38960 70.3 3.6e-50 194.9
Cme01g01353 CCT,ECH 1 205 C2C2-CO-like Transcription Factor Family AT4G39070 54.0 4.4e-51 198.4
Cme03g01907 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.4 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42129 PF00643 zf-B_box 2.90E-06 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00162 Cme_Chr11 FPKM 0.567034 1.016448 8.966451 9.750296 21.5361 21.148256 24.168459 2.944021 2.339029 2.601645