Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00167 TCTCTCTCTCTCTCTCTCTCTCCTCTCCTTATTTCTTCTTCCTTCTCCGATCCCCCCGCCGTTTCTCCTCCGATTCCCGCCGGGCCAGATTCGTCCCGTCGTATGGAGGCCATCCGAAAGCAAGCCACTAAGCTCCGTGAACAGGTCGCTCGCCAGCAACAGGCTGTACTCAAACAGTTTGGTGCTGGAGGATATGGAGGTTCGGATAACATTATTACGGATGAGGCAGAGCTTCACCAACACCAAAAACTAGAAAAGTTGTATATATCAACTCGTGCTGGAAAGCACTTTCAAAGGGATATTGTACGAGGAGTAGAGGGATATATTGTAACCGGTTCGAAACAAGTTGAAATAGGAACAAAGTTGTCAGAGGATAGCAGGAAATATGGTGCTGAAAATACATGTACTAGTGGAAACACATTATCGAAAGCTGCTCTAAATTATGGGCGAGCCCGAGCTCAAATGGAGAAAGAGCGTGGAAACATGCTGAAGGCTCTTGGCACTCAGGTAGCAGAGCCGTTGAGAGCAATGGTTATGGGTGCTCCTTTGGAGGATGCTCGACATCTTGCTCAACGTTATGATAGAATGCGACAAGAAGCAGAAGCTCAGGCTATTGAGGTTTTCAAGCGCCAGGCAAGAGTTAGGGAAGCACCAGGGAATGCTGAGATTACTGTGAAGTTGGAAGCTGCCGAAGCGAAATTGCAAGATCTAAAGTCAAATATGGCAACAATGGGAAAGGAAGCTGCAGCAGCCATGGCTGCTGTTGAAGCTCAACAACAGAGGCTAACTCTCCAACGACTCATTGCCATGGTTGAAGCAGAACGTGCCTATCATCAGAGAGTCCTTCAGATACTTGATCAGCTTGAAGGCGAGATGATATTGGAGCGGCAGAGAATTGAAGCTCCACCAACTCCTCCTCCTGGTCCAAGTATCGACAATAGCATGCCGCCTCCCCCATCATATGAAGAAGTCAATGGTGTATTTGCTTCTCAAGCACATAATGGCTCAACGGATGCCATGGGTTACTTTTTGGGGGAGGTTATGCATCCGTACCTAGCCGAGTCAGATGTTGAGCTCAATTTATCAGTTGGCGACTACGTTGTTGTCAGAAAGGTGTCGAACAATGGTTGGGCCGAGGGAGAGTGCAAAGGTAAAGCAGGTTGGTTCCCGTTCGGATATATCGAAAGAAGAGAACGCGTACTTGCAAGTAAGGTTGCTGAGGTGTTTTGA 1230 47.89 SLSLSLSPLLISSSFSDPPAVSPPIPAGPDSSRRMEAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGNTLSKAALNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARVREAPGNAEITVKLEAAEAKLQDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMILERQRIEAPPTPPPGPSIDNSMPPPPSYEEVNGVFASQAHNGSTDAMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1804046 1808024 - MELO3C023347.2.1 Cme11g00167 340830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00167 409 Coils Coil 254 274 - -
Cme11g00167 409 SUPERFAMILY SH3-domain 304 397 IPR036028 GO:0005515
Cme11g00167 409 PANTHER SH3 DOMAIN-CONTAINING 35 409 - -
Cme11g00167 409 Coils Coil 183 203 - -
Cme11g00167 409 PANTHER PROTEIN, PUTATIVE-RELATED 35 409 - -
Cme11g00167 409 MobiDBLite consensus disorder prediction 1 18 - -
Cme11g00167 409 SUPERFAMILY BAR/IMD domain-like 81 292 IPR027267 -
Cme11g00167 409 Coils Coil 35 55 - -
Cme11g00167 409 Gene3D SH3 Domains 345 397 - -
Cme11g00167 409 Pfam Variant SH3 domain 347 395 IPR001452 GO:0005515
Cme11g00167 409 SMART SH3_2 343 398 IPR001452 GO:0005515
Cme11g00167 409 MobiDBLite consensus disorder prediction 1 32 - -
Cme11g00167 409 ProSiteProfiles Src homology 3 (SH3) domain profile. 340 399 IPR001452 GO:0005515
Cme11g00167 409 Coils Coil 220 247 - -
Cme11g00167 409 Gene3D Arfaptin homology (AH) domain/BAR domain 33 295 IPR027267 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00167 - - - csv:101205534 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00775 Cme-Chr7:7129876 Cme11g00167 Cme-Chr11:1804046 5.87E-59 dispersed
Cme11g00167 Cme-Chr11:1804046 Cme12g01242 Cme-Chr12:20564455 3.57E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00167 Cme_Chr11 FPKM 12.745526 13.603154 17.602865 18.70466 10.474735 11.216224 10.414228 22.263851 21.450493 22.156223