Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00178 ATGCCGGCCCTAGCTTATTGCGTAGACGCTGCTGTAGCTCCTCCTCCTGGCTACGTTTTTGCTGGGGATAGCTCTCTTCCGTCGTCGGTTTTATTTTCCGGCGGACCTCCGGAGACTACCATCTTTTCCTCTCCTGACTCTACTCCCACCTCTGAAACTATGTCATGGTCTCCTCCTCTTTCGTCTTCTCTTTACAAGATTGATGGGTGGGGTGCTCCTTATTTCTCTGTTAATGGTTCTGGGAATATGGCTGTTCGTCCTTATGGGACAGCTACTTTACCCCATCAGGAGATTGATTTGCTTAAAATTGTGAAGAAGGCTTCAGATCCGATTTGTTCTGGTGGTCTTGGCTTGCAGCTTCCTCTTATTGTGAGATTTCCCGATGTGCTCAAGAATCGTCTTGAGTCTCTTCAGTCGGCATTTGACTATGCTATTCAATCTCAAGGATATGGTTCTCATTACCAGGGTGTTTATCCCGTCAAATGTAACCAGGACAGGTTTGTTGTTGAGGATATTGTGAAATTCGGATCTCCTTTCCGTTTTGGGCTTGAAGCTGGGTCGAAACCGGAGCTTCTTCTGGCAATGAGCTGTTTGTGTAAAGGGAATTCAGATGCCTTTTTGGTGTGTAATGGTTTCAAGGATGCGGAGTACATTTCTTTGGCGCTTATAGCTAGGAAGCTTGCTTTGAACACGGTGATTGTTCTTGAACAAGAGGAAGAAATTGATTTGGTTATTGATTTGAGCAAGAGGCTGTTTGTTCGTCCTGTCGTTGGTATGCGCGCGAAGCTGAGAACCAAACACTCTGGACATTTTGGGTCTACCTCTGGCGAGAAAGGGAAGTTTGGTCTTACGACTACCCAGATTCTTCGGGTGGTTCGGAAGCTTGAACAGGCTGATATGCTTGATTGCCTTCAATTGCTACATTTTCACATTGGATCCCAGATCCCCTCTACTGCTTTGCTCGCTGATGGCGTTGGCGAGGCTGCTCAGATCTATTGTGAATTGGTCCGTCTCGGTGCTAACATGCGTGTTATTGACATTGGAGGTGGTCTGGGTATTGACTATGACGGGTCGAAGTCTTCGGACTCTGAGTTATCTGTTGCTTATGGACTCGAAGAGTATGCTGCTGCGGTTGTCGATGCAGTCCGCTGTGTATGCGACCGTCGGTCCGTGAAGCACCCAATAATTTGCAGTGAAAGTGGCCGAGCAATCGTCTCTCATCACTCCGTTTTGATATTTGAGGCTGTCTCTGCTAGCAGTTATGAGGTCCCATCCATGAGCTCACTTGAACTTCAGTATCTTGTCGATGGGCTAACCGATGATGCTCGTGTAGATTATCAGAACCTTTCGGCTGCAGCTTATATGGGTGAGTATAAAACATGCTTGGTGTATGCAGATCAATTGAAACAACGATGCGTTGAGAAATTCAAGGATGGGTGTTTGGGAATGGAACAACTAGCTGCTGTAGATGGACTTTGTGCTCTTGTTGCCAAGGCTGTTGGAGAGTTGGACTCTGTTAGAACCTACCATGTGAACCTCTCTGTTTTCACATCAATTCCGGATTTCTGGGGTATCGACCAGCTGTTTCCAATTGTCCCCATTCATCGTCTTGATCAGAGACCAACCGTGAGAGGCGTGCTGTCTGATCTTACCTGTGACAGTGATGGTAAGGTTGATAAGTTCATTGGTGGTGAGTCGAGTTTGCCGTTGCACGAGCTGGAAGGCAATGGCAATTTGTCAGGTGGAGGAGGTGGGCGATACTATCTTGGGATGTTTCTGGGCGGGGCTTATGAGGAGGCTCTCGGTGGTGTTCACAACCTGTTTGGTGGCCCGAGTGTGGTTCGGGTGATGCAGAGTGATGGACCGCATAGCTTCGCGGTGACTCGCACTGTGCCTGGGCCATCATGTGGGGATGTCCTCCGAGTGATGCAGCACGAGCCCGAACTCATGTTTGAGACCCTCAAGCACCGAGCTGAAGAGTTTGGACAGGAGGATGATGATGGTGGTGAGGGCATAGCTAATAGCTTGGCCATGTCCTTTCGCAATATGCCTTATTTGTCGAGTGCATCTTCCTGCTGCAGTGAGACTGATTACAATGGTGCTGTGGATTCTGGTGCTGGTGATGCCGAGCAATGGACTTATTGTTATGCTTAA 2154 48.24 MPALAYCVDAAVAPPPGYVFAGDSSLPSSVLFSGGPPETTIFSSPDSTPTSETMSWSPPLSSSLYKIDGWGAPYFSVNGSGNMAVRPYGTATLPHQEIDLLKIVKKASDPICSGGLGLQLPLIVRFPDVLKNRLESLQSAFDYAIQSQGYGSHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNSDAFLVCNGFKDAEYISLALIARKLALNTVIVLEQEEEIDLVIDLSKRLFVRPVVGMRAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVRKLEQADMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSSDSELSVAYGLEEYAAAVVDAVRCVCDRRSVKHPIICSESGRAIVSHHSVLIFEAVSASSYEVPSMSSLELQYLVDGLTDDARVDYQNLSAAAYMGEYKTCLVYADQLKQRCVEKFKDGCLGMEQLAAVDGLCALVAKAVGELDSVRTYHVNLSVFTSIPDFWGIDQLFPIVPIHRLDQRPTVRGVLSDLTCDSDGKVDKFIGGESSLPLHELEGNGNLSGGGGGRYYLGMFLGGAYEEALGGVHNLFGGPSVVRVMQSDGPHSFAVTRTVPGPSCGDVLRVMQHEPELMFETLKHRAEEFGQEDDDGGEGIANSLAMSFRNMPYLSSASSCCSETDYNGAVDSGAGDAEQWTYCYA 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2027153 2030463 - MELO3C023359.2.1 Cme11g00178 340841

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00178 717 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 65 618 IPR009006 GO:0003824
Cme11g00178 717 Gene3D - 425 505 - -
Cme11g00178 717 PIRSF ARGDC 43 694 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 126 141 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 150 164 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 208 223 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 234 255 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 258 280 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 386 403 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 512 533 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 537 562 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PRINTS Arginine decarboxylase signature 595 616 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 PANTHER ARGININE DECARBOXYLASE 1 699 - -
Cme11g00178 717 TIGRFAM speA: arginine decarboxylase 57 687 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 158 176 IPR022653 -
Cme11g00178 717 CDD PLPDE_III_ADC 117 616 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 339 352 IPR022657 -
Cme11g00178 717 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 158 176 IPR000183 GO:0003824
Cme11g00178 717 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 194 IPR000183 GO:0003824
Cme11g00178 717 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 301 314 IPR000183 GO:0003824
Cme11g00178 717 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 396 415 IPR000183 GO:0003824
Cme11g00178 717 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 595 608 IPR000183 GO:0003824
Cme11g00178 717 SUPERFAMILY PLP-binding barrel 126 408 IPR029066 -
Cme11g00178 717 PANTHER ARGININE DECARBOXYLASE 1 699 IPR002985 GO:0006527|GO:0008295|GO:0008792
Cme11g00178 717 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 151 406 IPR022644 GO:0003824
Cme11g00178 717 Gene3D Alanine racemase 127 408 IPR029066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00178 K01583 E4.1.1.19; arginine decarboxylase [EC:4.1.1.19] - csv:101204085 1373.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g51 Blo02g00651 Blo15g00662 Bda06g00971 Bda08g00964 Bpe07g00493 . . Bma12g00535 . . Cma02g00359 Cma20g00804 Car02g00226 Car20g00688 . . . . . . . . . . . . . . . . . Cone12ag1192 Cone8ag1240 . . Lsi10g00424 . Chy11g00329 . . . . . . . . . Sed05g3557 Cmo02g00362 Cmo20g00812 . . . . Cpe16g00280 Cpe05g01297 Bhi10g01930 Tan05g1229 Cmetu11g0754 . Hepe08g0965 . . . . . . . . . . Csa02g01315 . Cme11g00178
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004369 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 4 1 1 1 1 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00178 Cme_Chr11 FPKM 29.164673 35.218624 10.158663 9.408771 10.707647 9.067184 10.32528 25.038122 24.853802 26.121071