Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00187 | ATGCCGATCATTGTAGGAGTGGCGGTGGCGGCTGGGTTTTTGTTATTTGCTATGGCGTTGATATTCTTCGCTTGCAGCCGAAAGAAAAAGAAGCAAAATAATAGTTCCACGTACTACGACGACCCCTCCGGTCCCAAAGGTGGGGATCCATATTACAGCGGAAGGAATCACAACTGGAACAGTCCCGGCGAACATTACGTGAACATGGCGCCAATCAGCGGCGGTGGAGGCCAAGTAGGAGTATGGCCATCGCCCCCGCCTCCTCCTCCTCCGCTGGGAATCAACAGTGACGTGAGCTCCAATTTCTCAGGCCCACATGGACCACCGTTGCCGCCGCCGCACCCAGCGGTGGCGCTTGGGTTCAATAAGAGCACTTTCACTTACGACGAGCTGATGGCGGCGACGGCAGGGTTCTCCCCTGCAAATCTGTTGGGGCAAGGGGGATTCGGGTACGTTCATAAAGGAGTACTGCCAAATGGGAAGGAAATTGCCGTGAAAAGCCTGAAAACGGGAAGCAGACAAGGAGATCGGGAATTTGCGGCGGAGGTGGAGATCATCAGCCGTGTCCACCACCGACATTTGGTATCCCTGGTCGGATATTGTATTGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTTGAATTCCACCTTCACGGCGAGGGGAGGCCACCTTTGGACTGGTCGACTAGGGTGAAGATCGCATTGGGTTCGGCCAAAGGCTTGGCCTATCTCCACGAAGATTGTCATCCTCGCATTATCCATAGAGATATCAAAACTGCCAATATTCTCATAGACATGAGTTTCGAAGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCTACACGAGTTATGGGTACATTTGGATATTTGGCTCCAGAGTATGCATCGAGTGGAAAGCTAACAGAGAAATCAGATGTATTCTCATATGGTGTAATGCTTTTAGAATTGATTACCGGGAAACGACCTGTGGATGCAACGGGAGAAATGGAAGACAGCTTAGTGGACTGGTCTAGGCCTCTTTGTACAAAAGCAATAAACAACCAAGGAAATTTTGAGTTGGTTGATCCAAGGTTGGAGAATAACTATGATGTTGAAGAAATGGCTTGCATGGTGGCTTGCGCCGCAGCTTGCATTCGTCATTCTGCTCGTCGCCGCCCTAAAATGAGTCAGGTGGTACGAGCATTGGAAGGCGATGTGTCATTAGAGGACTTGAACGAGGGAATAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGTTCCTACAGCGCCGACATGAAGAAGTTCCGAAAAGTGGCGTTGGACAGCCGAGAGTACACAAGCAGCGATTACGGCGGCACCAGTGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATCAGTCGAAAACCTAGTGGCCTTTCCTCTCCCGTTGCACAACCTCCCAATCCCTAA | 1503 | 50.7 | MPIIVGVAVAAGFLLFAMALIFFACSRKKKKQNNSSTYYDDPSGPKGGDPYYSGRNHNWNSPGEHYVNMAPISGGGGQVGVWPSPPPPPPPLGINSDVSSNFSGPHGPPLPPPHPAVALGFNKSTFTYDELMAATAGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSRQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGEGRPPLDWSTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGKRPVDATGEMEDSLVDWSRPLCTKAINNQGNFELVDPRLENNYDVEEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLEDLNEGIKPGQSSYFGSGTSSEYDASSYSADMKKFRKVALDSREYTSSDYGGTSEYGLNPSSTSSEISRKPSGLSSPVAQPPNP | 500 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2262590 | 2268120 | + | MELO3C020981.2.1 | Cme11g00187 | 340850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00187 | 500 | MobiDBLite | consensus disorder prediction | 459 | 500 | - | - | |
Cme11g00187 | 500 | ProSiteProfiles | Protein kinase domain profile. | 138 | 416 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00187 | 500 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 | 1 | 468 | - | - | |
Cme11g00187 | 500 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 258 | 270 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g00187 | 500 | SUPERFAMILY | Protein kinase-like (PK-like) | 115 | 410 | IPR011009 | - | |
Cme11g00187 | 500 | ProSitePatterns | Protein kinases ATP-binding region signature. | 144 | 166 | IPR017441 | GO:0005524 | |
Cme11g00187 | 500 | Pfam | Protein tyrosine and serine/threonine kinase | 143 | 410 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g00187 | 500 | Gene3D | Phosphorylase Kinase; domain 1 | 115 | 213 | - | - | |
Cme11g00187 | 500 | MobiDBLite | consensus disorder prediction | 32 | 55 | - | - | |
Cme11g00187 | 500 | Gene3D | Transferase(Phosphotransferase) domain 1 | 214 | 421 | - | - | |
Cme11g00187 | 500 | SMART | serkin_6 | 138 | 410 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g00187 | 500 | MobiDBLite | consensus disorder prediction | 462 | 492 | - | - | |
Cme11g00187 | 500 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 1 | 468 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme09g00179 | Cme-Chr9:1371472 | Cme11g00187 | Cme-Chr11:2262590 | 7.62E-147 | dispersed | |
Cme10g00523 | Cme-Chr10:3371185 | Cme11g00187 | Cme-Chr11:2262590 | 8.21E-145 | dispersed | |
Cme11g00187 | Cme-Chr11:2262590 | Cme04g00927 | Cme-Chr4:12444515 | 5.39E-97 | dispersed | |
Cme05g01709 | Cme-Chr5:26134314 | Cme11g00187 | Cme-Chr11:2262590 | 1.15E-63 | transposed | |
Cme11g00187 | Cme-Chr11:2262590 | Cme07g01715 | Cme-Chr7:22658448 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65223 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-47 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00187 | - | - | csv:101217306 | 873.233 |