Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00187 ATGCCGATCATTGTAGGAGTGGCGGTGGCGGCTGGGTTTTTGTTATTTGCTATGGCGTTGATATTCTTCGCTTGCAGCCGAAAGAAAAAGAAGCAAAATAATAGTTCCACGTACTACGACGACCCCTCCGGTCCCAAAGGTGGGGATCCATATTACAGCGGAAGGAATCACAACTGGAACAGTCCCGGCGAACATTACGTGAACATGGCGCCAATCAGCGGCGGTGGAGGCCAAGTAGGAGTATGGCCATCGCCCCCGCCTCCTCCTCCTCCGCTGGGAATCAACAGTGACGTGAGCTCCAATTTCTCAGGCCCACATGGACCACCGTTGCCGCCGCCGCACCCAGCGGTGGCGCTTGGGTTCAATAAGAGCACTTTCACTTACGACGAGCTGATGGCGGCGACGGCAGGGTTCTCCCCTGCAAATCTGTTGGGGCAAGGGGGATTCGGGTACGTTCATAAAGGAGTACTGCCAAATGGGAAGGAAATTGCCGTGAAAAGCCTGAAAACGGGAAGCAGACAAGGAGATCGGGAATTTGCGGCGGAGGTGGAGATCATCAGCCGTGTCCACCACCGACATTTGGTATCCCTGGTCGGATATTGTATTGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTTGAATTCCACCTTCACGGCGAGGGGAGGCCACCTTTGGACTGGTCGACTAGGGTGAAGATCGCATTGGGTTCGGCCAAAGGCTTGGCCTATCTCCACGAAGATTGTCATCCTCGCATTATCCATAGAGATATCAAAACTGCCAATATTCTCATAGACATGAGTTTCGAAGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCTACACGAGTTATGGGTACATTTGGATATTTGGCTCCAGAGTATGCATCGAGTGGAAAGCTAACAGAGAAATCAGATGTATTCTCATATGGTGTAATGCTTTTAGAATTGATTACCGGGAAACGACCTGTGGATGCAACGGGAGAAATGGAAGACAGCTTAGTGGACTGGTCTAGGCCTCTTTGTACAAAAGCAATAAACAACCAAGGAAATTTTGAGTTGGTTGATCCAAGGTTGGAGAATAACTATGATGTTGAAGAAATGGCTTGCATGGTGGCTTGCGCCGCAGCTTGCATTCGTCATTCTGCTCGTCGCCGCCCTAAAATGAGTCAGGTGGTACGAGCATTGGAAGGCGATGTGTCATTAGAGGACTTGAACGAGGGAATAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGTTCCTACAGCGCCGACATGAAGAAGTTCCGAAAAGTGGCGTTGGACAGCCGAGAGTACACAAGCAGCGATTACGGCGGCACCAGTGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATCAGTCGAAAACCTAGTGGCCTTTCCTCTCCCGTTGCACAACCTCCCAATCCCTAA 1503 50.7 MPIIVGVAVAAGFLLFAMALIFFACSRKKKKQNNSSTYYDDPSGPKGGDPYYSGRNHNWNSPGEHYVNMAPISGGGGQVGVWPSPPPPPPPLGINSDVSSNFSGPHGPPLPPPHPAVALGFNKSTFTYDELMAATAGFSPANLLGQGGFGYVHKGVLPNGKEIAVKSLKTGSRQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGEGRPPLDWSTRVKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGKRPVDATGEMEDSLVDWSRPLCTKAINNQGNFELVDPRLENNYDVEEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLEDLNEGIKPGQSSYFGSGTSSEYDASSYSADMKKFRKVALDSREYTSSDYGGTSEYGLNPSSTSSEISRKPSGLSSPVAQPPNP 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2262590 2268120 + MELO3C020981.2.1 Cme11g00187 340850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00187 500 MobiDBLite consensus disorder prediction 459 500 - -
Cme11g00187 500 ProSiteProfiles Protein kinase domain profile. 138 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00187 500 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK5 1 468 - -
Cme11g00187 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Cme11g00187 500 SUPERFAMILY Protein kinase-like (PK-like) 115 410 IPR011009 -
Cme11g00187 500 ProSitePatterns Protein kinases ATP-binding region signature. 144 166 IPR017441 GO:0005524
Cme11g00187 500 Pfam Protein tyrosine and serine/threonine kinase 143 410 IPR001245 GO:0004672|GO:0006468
Cme11g00187 500 Gene3D Phosphorylase Kinase; domain 1 115 213 - -
Cme11g00187 500 MobiDBLite consensus disorder prediction 32 55 - -
Cme11g00187 500 Gene3D Transferase(Phosphotransferase) domain 1 214 421 - -
Cme11g00187 500 SMART serkin_6 138 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00187 500 MobiDBLite consensus disorder prediction 462 492 - -
Cme11g00187 500 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 468 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g00179 Cme-Chr9:1371472 Cme11g00187 Cme-Chr11:2262590 7.62E-147 dispersed
Cme10g00523 Cme-Chr10:3371185 Cme11g00187 Cme-Chr11:2262590 8.21E-145 dispersed
Cme11g00187 Cme-Chr11:2262590 Cme04g00927 Cme-Chr4:12444515 5.39E-97 dispersed
Cme05g01709 Cme-Chr5:26134314 Cme11g00187 Cme-Chr11:2262590 1.15E-63 transposed
Cme11g00187 Cme-Chr11:2262590 Cme07g01715 Cme-Chr7:22658448 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65223 PF07714 PK_Tyr_Ser-Thr 1.10E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00187 - - csv:101217306 873.233