Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00196 TTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCTCTTCCCACGTGAAAAATATCCTCTCTCTCCCTTTTCTCACTCTCCCTATAAATTCCACTCCTCCCTCCCACTCTCACTACCACAAAAAAGAAAAGAACATACCTCTTCATCATATAATTCCCTTTCTCACATGGAGTCTTGTTTACTTAAACCAAAAGACACCACCTCTTGGTGGGTTCTAACCCTACCTTATTTCCTTGGCCTTGAAAACTATGCCTTCTTTCACTCTTTCCTCCTCATTCTCCTCGCTTTCTTCTCTCTCGCTTTTCTCACCTGGGTTTTTTCACCAGGTGGTACTGCTTGGAGAAATGGAAGAAACCGTCGGGGCCTACTCCCTATACCTGGCCCTCGTGGCCTTCCATTTCTTGGCAGTTTGTTCACTCTCACTCATTCCTTACCTCATCGCACTCTTGCTGCCTTAGCATCGACCCGTTGCGAGTCTCATCTTATGGCTTTCTCTCTCGGCTCCACTCCTGTTGTCGTCGCATCTGACCCTAAAACCGCTAAGGAAATCTTAACCTCCCCACACTTTGCGGACCGCCCGCTTAAGCAGTCCGCGAAGAGTCTAATGTTTGGTCGAGCCATAGGGTTCGCACCGAATGGAACGTACTGGCGTATGTTAAGAAGAATTGCGTCTTCCCACCTTTTCTCTCCAAAGCGTATTGCCGCTCACGAGAGCGCTCGTCAGCGGCAATGCGCGGAAATGATTCGCAACATTCACCATGAACAAATTCTCCATGGAAGTGTGGGGTTGAGGAACCATGTTCAAGTGGCTTCATTGAAGAACGTGATGTGGAGTGTGTTTGGGAAAGAGTTTAAGGAAGGGGATACGGAATTGGAAATGGTTCGTGATATGGTTCGTGAAGGATTTGAGCTATTGGGTGCGTTTAATTGGTCGGATTATATGCCGTGGCTGAGTTGGTTTTATGATCCGTTTCGTATTAACCAACGGTGCGCTAAACTTGTTCCTAAGGTTAATGAATTTGTTGGTGGCGTAATTGATGAACACCGCCGTTGTAAAACTTTGTGCGACGATTCTGATTTTGTTGACGTTTTGCTTTCTCTTGATGGTGATGAAAAACTCAACGATGATGACATGGTCGCTGTTTTATGGGAAATGATATTTAGGGGTACGGATACGACAGCGCTACTAACGGAATGGGTGATGGCGGAGTTAGTTTTACACGGCGAAATTCAAGAAGAAGTTAGGAAGGAAATAGAAAGAGTAGTCGGCGGCGGCGGTGAGGGAACAAACATCACGGACGCTGAGGTGGCGAAACTACCTTACTTACAGGCGGTGGTGAAGGAAACTCTACGGCTACACCCACCGGGCCCACTTCTCTCGTGGGCCCGTCTCTCTTCGTCGGATGTCCAGCTCAGCAACGGCATGCTTATCCCTCAGAACACAACCGCCATGGTCAATATGTGGGCCATCACCCACGATCCCCACGTATGGGAAGAACCACACGTGTTCAACCCCGCCAGGTTCCTCAATGCCGACGTGGACGTCCGTGGCAGCGACCTCCGCCTTGCCCCCTTCGGGGCAGGCCGGAGGGTCTGCCCGGGTAAAAACCTCGGCCTTGTCACCGTCACCTTATGGGTCGCTAAGTTGGTGCATCACTTTAAATGGGCCCCCGACCCGGCCCACCCCGTGGATCTAACCGAACTTCTTAAGCTCTCCTGTGAGATGAAGAATCCTCTACGTGCAGTCGTAGGGGAAATACGTGGTCTTTAG 1776 49.77 FLFLFLFLFLFLFLFPREKYPLSPFSHSPYKFHSSLPLSLPQKRKEHTSSSYNSLSHMESCLLKPKDTTSWWVLTLPYFLGLENYAFFHSFLLILLAFFSLAFLTWVFSPGGTAWRNGRNRRGLLPIPGPRGLPFLGSLFTLTHSLPHRTLAALASTRCESHLMAFSLGSTPVVVASDPKTAKEILTSPHFADRPLKQSAKSLMFGRAIGFAPNGTYWRMLRRIASSHLFSPKRIAAHESARQRQCAEMIRNIHHEQILHGSVGLRNHVQVASLKNVMWSVFGKEFKEGDTELEMVRDMVREGFELLGAFNWSDYMPWLSWFYDPFRINQRCAKLVPKVNEFVGGVIDEHRRCKTLCDDSDFVDVLLSLDGDEKLNDDDMVAVLWEMIFRGTDTTALLTEWVMAELVLHGEIQEEVRKEIERVVGGGGEGTNITDAEVAKLPYLQAVVKETLRLHPPGPLLSWARLSSSDVQLSNGMLIPQNTTAMVNMWAITHDPHVWEEPHVFNPARFLNADVDVRGSDLRLAPFGAGRRVCPGKNLGLVTVTLWVAKLVHHFKWAPDPAHPVDLTELLKLSCEMKNPLRAVVGEIRGL 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2349690 2351870 - MELO3C020975.2.1 Cme11g00196 340859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00196 591 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 527 536 IPR017972 GO:0005506|GO:0016705
Cme11g00196 591 PANTHER CYTOCHROME P450 78A7-RELATED 68 585 - -
Cme11g00196 591 Pfam Cytochrome P450 128 565 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PANTHER CYTOCHROME P450 FAMILY 78 PROTEIN 68 585 - -
Cme11g00196 591 PRINTS P450 superfamily signature 525 534 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS P450 superfamily signature 446 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS P450 superfamily signature 534 545 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS P450 superfamily signature 390 407 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 Gene3D Cytochrome P450 114 585 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 399 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 488 512 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 534 557 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 157 176 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 379 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 272 290 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 445 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 PRINTS E-class P450 group I signature 524 534 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme11g00196 591 SUPERFAMILY Cytochrome P450 127 584 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01458 Cme-Chr3:23861080 Cme11g00196 Cme-Chr11:2349690 5.03E-171 dispersed
Cme11g00196 Cme-Chr11:2349690 Cme11g02256 Cme-Chr11:29665912 2.37E-164 dispersed
Cme11g00196 Cme-Chr11:2349690 Cme12g01927 Cme-Chr12:25293372 9.74E-170 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00196 K20619 - csv:101214099 970.689