Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00203 TTCGACTTCAACTCAAAATCACAAAAAAAGTTGAAAAGAAATCACTTTCCTTCTCTTTCTTCTCATCCTTCAAAATCCACCCTCTTGAAGAAAAGGCATAGCCATTGCCAAAGCTCCTCTTTTTTTTTTTTTTTCCTTGACAAAAAGAGAAGAAGAAAAATGGGTTCAAAATCCCAAGTTCTATTGAACCCACAAGCTTTGTTGGAAGATCATCAAGAAGTGACACCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAATTTAACCTTTTTTCAACTTCCTTCAATCCCTCAAACCCATTCTCCTTCACCTTCATTTGATCCTCCAAATTTCTCCACTTCCAATAACAATACCAATAATAATAATAATAACAATTCCAATAATCTTTCTGAAACCCTACTTTCTTCTTCTATTTTGCCTCTCAAATCCTCCATTTCCTATGAAATTGCACCCCAACATCTTCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAAATTGGAGAAAGACTATTGATGAATGGGAAGAGATCAAATAATAATGAGAATAATAATAATCAATTGGGAGTATCAAAAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAGCCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGAGAAAATATGGACAGAAAGTGGTAAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCATTGTAGGGTTAAGAAAAGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGCAGACATGTTCATTCTCCTTCCCATGATTCTGAAGATTCTGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA 906 35.1 FDFNSKSQKKLKRNHFPSLSSHPSKSTLLKKRHSHCQSSSFFFFFLDKKRRRKMGSKSQVLLNPQALLEDHQEVTPNSQMGFFNFPSNLTFFQLPSIPQTHSPSPSFDPPNFSTSNNNTNNNNNNNSNNLSETLLSSSILPLKSSISYEIAPQHLLSLQTSTPNLWPWGEIGERLLMNGKRSNNNENNNNQLGVSKMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2425562 2428083 - MELO3C020967.2.1 Cme11g00203 340866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00203 301 SUPERFAMILY WRKY DNA-binding domain 216 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g00203 301 MobiDBLite consensus disorder prediction 99 129 - -
Cme11g00203 301 Gene3D WRKY domain 211 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g00203 301 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 105 295 IPR044810 GO:0003700
Cme11g00203 301 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 105 295 - -
Cme11g00203 301 SMART WRKY_cls 224 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g00203 301 MobiDBLite consensus disorder prediction 1 32 - -
Cme11g00203 301 ProSiteProfiles WRKY domain profile. 219 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g00203 301 Pfam WRKY DNA -binding domain 225 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00203 Cme-Chr11:2425562 Cme11g02090 Cme-Chr11:28560931 5.81E-34 dispersed
Cme06g00007 Cme-Chr6:80360 Cme11g00203 Cme-Chr11:2425562 1.77E-45 transposed
Cme11g00203 Cme-Chr11:2425562 Cme08g00470 Cme-Chr8:2897116 8.35E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42132 PF03106 WRKY 5.90E-24 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00203 - - cmo:103497483 426.402