Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00203 | TTCGACTTCAACTCAAAATCACAAAAAAAGTTGAAAAGAAATCACTTTCCTTCTCTTTCTTCTCATCCTTCAAAATCCACCCTCTTGAAGAAAAGGCATAGCCATTGCCAAAGCTCCTCTTTTTTTTTTTTTTTCCTTGACAAAAAGAGAAGAAGAAAAATGGGTTCAAAATCCCAAGTTCTATTGAACCCACAAGCTTTGTTGGAAGATCATCAAGAAGTGACACCAAATTCTCAAATGGGTTTCTTCAATTTCCCTTCAAATTTAACCTTTTTTCAACTTCCTTCAATCCCTCAAACCCATTCTCCTTCACCTTCATTTGATCCTCCAAATTTCTCCACTTCCAATAACAATACCAATAATAATAATAATAACAATTCCAATAATCTTTCTGAAACCCTACTTTCTTCTTCTATTTTGCCTCTCAAATCCTCCATTTCCTATGAAATTGCACCCCAACATCTTCTTTCCTTGCAAACATCCACTCCAAATCTATGGCCATGGGGAGAAATTGGAGAAAGACTATTGATGAATGGGAAGAGATCAAATAATAATGAGAATAATAATAATCAATTGGGAGTATCAAAAATGAAGATGAAGAAAATGAAAGGAAGAAGAAAAGTGAGAGAGCCAAGATTCTCATTCAAGACCATGAGCGATGTTGATGTTCTTGATGATGGTTACAAATGGAGAAAATATGGACAGAAAGTGGTAAAAAACACACAACATCCTAGAAGCTATTATCGTTGTACACAAGATCATTGTAGGGTTAAGAAAAGAGTAGAGAGATTAGCTGAGGATCCAAGAATGGTGATTACAACTTATGAAGGCAGACATGTTCATTCTCCTTCCCATGATTCTGAAGATTCTGAAGCTCAAACCCATCTCAATAATTTCTTTTGGTAA | 906 | 35.1 | FDFNSKSQKKLKRNHFPSLSSHPSKSTLLKKRHSHCQSSSFFFFFLDKKRRRKMGSKSQVLLNPQALLEDHQEVTPNSQMGFFNFPSNLTFFQLPSIPQTHSPSPSFDPPNFSTSNNNTNNNNNNNSNNLSETLLSSSILPLKSSISYEIAPQHLLSLQTSTPNLWPWGEIGERLLMNGKRSNNNENNNNQLGVSKMKMKKMKGRRKVREPRFSFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDHCRVKKRVERLAEDPRMVITTYEGRHVHSPSHDSEDSEAQTHLNNFFW | 301 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2425562 | 2428083 | - | MELO3C020967.2.1 | Cme11g00203 | 340866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00203 | 301 | SUPERFAMILY | WRKY DNA-binding domain | 216 | 283 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00203 | 301 | MobiDBLite | consensus disorder prediction | 99 | 129 | - | - | |
Cme11g00203 | 301 | Gene3D | WRKY domain | 211 | 277 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00203 | 301 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 105 | 295 | IPR044810 | GO:0003700 | |
Cme11g00203 | 301 | PANTHER | WRKY TRANSCRIPTION FACTOR 13-RELATED | 105 | 295 | - | - | |
Cme11g00203 | 301 | SMART | WRKY_cls | 224 | 283 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00203 | 301 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cme11g00203 | 301 | ProSiteProfiles | WRKY domain profile. | 219 | 284 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cme11g00203 | 301 | Pfam | WRKY DNA -binding domain | 225 | 281 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g00203 | Cme-Chr11:2425562 | Cme11g02090 | Cme-Chr11:28560931 | 5.81E-34 | dispersed | |
Cme06g00007 | Cme-Chr6:80360 | Cme11g00203 | Cme-Chr11:2425562 | 1.77E-45 | transposed | |
Cme11g00203 | Cme-Chr11:2425562 | Cme08g00470 | Cme-Chr8:2897116 | 8.35E-23 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42132 | PF03106 | WRKY | 5.90E-24 | CL0274 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00203 | - | - | cmo:103497483 | 426.402 |