Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00207 ATGGATGTTTCTGCTACCAAAAGAAGGCTCCTCAAAGTCATCTTCCTCGGTGACAGTGGATATGTGTATAAGAAGTTTAATCTACAGTACAAAGCAACAATTGGTGCTGACTTTATGACAAAGGAGCTACAGATTGATGACCAACTTGTCACATTGCAAGTTTGGGACACAGCTGGGCAAGAAAGGTTTCAGAGTCTAGGGGCTGCATTTTACAGAGGAGCAGATTGCTGTGTTTTTGTTTATGACGTGAATGCGGTCAAATCATTTGAGTCACTAACTAGTTGGCATGAGGAGTTTCTCAAGCAGGCCGGGCCAGCTGATCCGAAAGCATTTCCCTTCCTTTTACTTGGAAACAAGATTGATGTAGACAATGGGCATAACCGAGCCGTAAGGATTTTCAAATCTTTATCCGAAACTAATGATAATGTATCAGAGAAAAGAGCAAGACAATGGTGTGATTCTAGGGGAAGCATGCCATACTTTGAGACCTCCGCAAAAGAGGATTATAATGTCAATGAAGCATTTCTTTGCATTGCAAAAGCTGCACTAACCAACGAAGAAGAGGAAGAACCTTACTTTGAAAGTATTTCCGAGTCGGTTTCAGAGGTGGAGACAAGAGGAGGAGGTGGTGGTTGTGCTTGTTAA 645 42.33 MDVSATKRRLLKVIFLGDSGYVYKKFNLQYKATIGADFMTKELQIDDQLVTLQVWDTAGQERFQSLGAAFYRGADCCVFVYDVNAVKSFESLTSWHEEFLKQAGPADPKAFPFLLLGNKIDVDNGHNRAVRIFKSLSETNDNVSEKRARQWCDSRGSMPYFETSAKEDYNVNEAFLCIAKAALTNEEEEEPYFESISESVSEVETRGGGGGCAC 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2469099 2471535 - MELO3C020964.2.1 Cme11g00207 340870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00207 214 Gene3D - 4 198 IPR027417 -
Cme11g00207 214 ProSiteProfiles small GTPase Rab1 family profile. 4 214 - -
Cme11g00207 214 SMART ras_sub_4 8 185 - -
Cme11g00207 214 PANTHER RAB FAMILY 1 214 - -
Cme11g00207 214 CDD Rab7 11 185 - -
Cme11g00207 214 TIGRFAM small_GTP: small GTP-binding protein domain 23 142 IPR005225 GO:0005525
Cme11g00207 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 191 IPR027417 -
Cme11g00207 214 SMART rab_sub_5 11 185 - -
Cme11g00207 214 ProSiteProfiles small GTPase Ras family profile. 1 214 IPR001806 GO:0003924|GO:0005525
Cme11g00207 214 Pfam Ras family 21 182 IPR001806 GO:0003924|GO:0005525
Cme11g00207 214 PRINTS Transforming protein P21 ras signature 43 65 - -
Cme11g00207 214 PRINTS Transforming protein P21 ras signature 109 122 - -
Cme11g00207 214 PRINTS Transforming protein P21 ras signature 25 41 - -
Cme11g00207 214 PRINTS Transforming protein P21 ras signature 160 182 - -
Cme11g00207 214 PANTHER - 1 214 - -
Cme11g00207 214 SMART rho_sub_3 13 185 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00207 K07897 RAB7A; Ras-related protein Rab-7A - csv:101212418 356.295
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01430 Cme11g00207 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01060 Cme-Chr1:13140600 Cme11g00207 Cme-Chr11:2469099 6.06E-102 dispersed
Cme01g02694 Cme-Chr1:34316563 Cme11g00207 Cme-Chr11:2469099 5.36E-78 dispersed
Cme11g00207 Cme-Chr11:2469099 Cme08g00766 Cme-Chr8:5128762 2.66E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g580 . . . . . Bpe12g00077 . . Cmo19g00673 . . . . . . . Cpe15g00533 Bhi05g01223 Tan02g0809 . . Hepe02g0515 . . Cla02g00529 Cam02g0547 Cec02g0548 Cco02g0554 Clacu02g0548 Cmu02g0543 Cre02g0874 Cone12ag1146 Cone8ag1194 Cone3ag1157 Cone10ag1166 Lsi10g00673 . . Cme01g01430 Blo04g00507 Blo13g00556 Bda15g00017 Bda14g00548 . . . . . . . . Cma19g00659 . Car19g00502 . Cpe01g00429 . . . . . . . . . . . . . . Lsi11g01095 . Chy01g00795 Cme11g00207
Vvi7g1168 . Blo16g00503 . . . . . . . . . Cma20g01106 . Car20g00951 . . Cpe16g00052 . . . . . . . . . . . . . . . . Cone8ag0070 . . . . . . . Bda11g01339 . . . . Bma06g00545 Sed05g3820 . Cmo20g01136 . . . . . . Bhi10g02307 Tan07g0957 . . Hepe10g0784 . . Cla02g00101 Cam02g0107 Cec02g0108 Cco02g0100 Clacu02g0104 Cmu02g0098 Cre02g0439 Lsi10g00673 Csa02g01557 . Cme11g00207
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002492 2 2 2 2 2 1 3 1 1 1 1 1 2 2 2 2 1 2 2 1 2 2 2 2 2 2 2 5 4 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00207 Cme_Chr11 FPKM 0.0 0.0 0.0 0.0 1.382529 0.527233 1.629396 0.0 0.0 0.0