Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00217 ATGACTGTTGACCATTGCTCCATTTTCATTTCATTAGGTCTTCCTTCATTTTCTTTCACCATGTTCGTCGCCAAGATCCTCTCCTTCTTCCCATTTTCTTTGGAAATGATGGGAGGACAATCTAGCAAAAGCAAATCAGGTGGTGGCGATGTTTCTCTTCCTCCACTTCCCATCAATGATGCTCACTATGCAGCTGCCCTTAGTTCATATGAAGCTGAGTGTGCAAACAATACAGATTTACGATCCTTTGATGTTCAAGTGCACGAAAGGACGAACCGAGCTCTCAATTCACTGGCTGATGGAGTTGCGGTTGGGTCGTTGTCAATGGATGCACTCATGGAGGTCACTGACTTCTTACTGGAAATGAATGGAGATGCTGTCAAGATTATCCTCGAAAGTAAAGAGGATGTTTGGAACAAAGAGTTGTTTAGTCTTGTGGATGCATTCTTTGATAACAGTCTCAAAGTGTTAGAATTCTGTAAGGCGTTGGAGGTGAGCTTACGACGTACTCGGGACAGCCAGTTCATTATAAAACTTGCTGTTAGAAAGTTTGAGAGTGATGAGAATAATGGAGATAATGGTGAGAGATATGTTAAAACATTTGAAGAGTTGAAGAAATTTCAGGAGGCTGGGGATCCATTTGGTGAGGAGTTTGTTACATTATTCCGGTCCTTGTACAAAGAGCATTTATCTATGTTCAAGAAGTTGCAACGTCAAAAGAAGAAGCTTGACAAGAAATATACGACCATGAAGACATGGAAGACGGTGTCGAATGTCATTTTGGTTACTGCATTTGCTTCCGTACTGATTTTTTCGGTCGTAGCAGCTGCAATGTCTGCACCTCCCGTGGTGATTGCATTGGGTGCTGCACTAGCTGTTCCAATGGGTCCAGTTGGGAAATGGTGTAACACGCTGTGGAACCGATACTTGAACAGCATTAAAGTTGAAAAGCAACTTCTGAGCTCTATGGAAGGTCACAGCTTCATAATTCTAAAGGACTTTGAGAACATTAGATTACTCGTGCGCAGATTATCAATTCAATTAGGTTCGTTACTGCAGAATGCCAATCTTGGCATTAGGGAGCAGGGCGCTATGCAGCTTGTAATAGATGAAATCAAGAAAAACCTTGAAGGTTTTGATGAGACCATTGATAAATTGAGTGTACATGCTACTAAATGCAGCACAGATGTAACAAAGGCAAGAGAAGTCATTCTTCAGAAAATAGCAAGGCAATCTAACAGCTGA 1245 41.69 MTVDHCSIFISLGLPSFSFTMFVAKILSFFPFSLEMMGGQSSKSKSGGGDVSLPPLPINDAHYAAALSSYEAECANNTDLRSFDVQVHERTNRALNSLADGVAVGSLSMDALMEVTDFLLEMNGDAVKIILESKEDVWNKELFSLVDAFFDNSLKVLEFCKALEVSLRRTRDSQFIIKLAVRKFESDENNGDNGERYVKTFEELKKFQEAGDPFGEEFVTLFRSLYKEHLSMFKKLQRQKKKLDKKYTTMKTWKTVSNVILVTAFASVLIFSVVAAAMSAPPVVIALGAALAVPMGPVGKWCNTLWNRYLNSIKVEKQLLSSMEGHSFIILKDFENIRLLVRRLSIQLGSLLQNANLGIREQGAMQLVIDEIKKNLEGFDETIDKLSVHATKCSTDVTKAREVILQKIARQSNS 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2569630 2572061 + MELO3C020955.2.1 Cme11g00217 340880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00217 414 Pfam Protein of unknown function (DUF677) 80 408 IPR007749 -
Cme11g00217 414 Coils Coil 226 246 - -
Cme11g00217 414 PANTHER TRANSMEMBRANE PROTEIN 37 410 - -
Cme11g00217 414 PANTHER UPF0496 PROTEIN 3-RELATED 37 410 IPR007749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00217 - - - cmo:103497471 771.155
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01476 Cme11g00217 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00217 Cme-Chr11:2569630 Cme11g00470 Cme-Chr11:4594627 5.40E-98 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g553 . . . . . Bpe12g00073 . . . Cmo11g01319 . . . . Sed05g3639 Cpe04g00248 . Bhi05g01192 Tan02g0838 Cmetu11g2382 . Hepe02g0535 . . Cla02g00548 Cam02g0572 Cec02g0574 Cco02g0585 Clacu02g0572 Cmu02g0568 Cre02g0899 Cone12ag1134 Cone8ag1181 Cone3ag1139 Cone10ag1150 Lsi10g00657 . . Cme01g01476 . . Bda15g00019 . . . . . . . . . . Car11g01063 . . . . . . . . . . . . . . . . . Lsi11g01067 . Chy01g00825 Cme11g00217
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000668 4 2 2 2 4 3 3 3 3 2 3 3 4 3 3 4 3 8 4 3 3 3 6 3 3 3 4 3 3 1 98
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00217 Cme_Chr11 FPKM 19.157862 20.276232 19.479145 19.458387 31.659195 33.566593 35.421284 21.802643 22.693459 22.881231