Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00219 ATGAGCGCAGTTATCACTAACGAAGACACTTGTTACGAAGGGTTGGCGGGTTTGGACTCAGCCGTGGGATTGGTTGATAAGGTGTTGGAAGCTATCTCTTTTGATAAGAAGCTATATAGTCTGTACCTTTCATTGTTCAAAATGGGTTGGGTTTCTAAGGACTTGAAGGCTCCTACGTTGCCAAAAATGAAACATTTTGGGGTTGGGAAAGGGCAGTTGAAGCTTAAGATGTCGCCCAAAGATCGTGCTTATTATGAGCGGTTGGTTCATAGGAACAAGCCGCCGGGTGCTAGAAGGCTTCTTCAAACCAATTACCAAGATGATGGAATTGTTATCAATGGCATTGTTGGTGTGGATCAAAATGGAACGTACGACTTCACAAATATCACAGCCGCAATAGCTGCAGCTCCCAACAAGACCACCGTCGCTAAGGGATACTTCTTGATCTTCGTCGCCGCTGGCATTTACAACGAGACCGTATTGATTCCTAAAGAAAAAAGATACGTTCTGTTGATCGGAGAAGGTAACAACCAAACCATCATCACCGGCAACAAAAACGTCGTTGATGGCTCAACCACTTTCAATAGCGCAACCGTTGCTGTGGAGGGAACGGGGTTCTTGGGAGTGAACCTAACGATCAGCAACACCGCTGGAGCTGCCAAACATCAAGCAGTTGCCCTCCGAGTGAGCGCCGACAACGCGACGTTATACAACTGCATATTCGAAGGCTATCAAGACACTCTCTACACCCACTCCCTCCGTCAATTCTACAGAGAATGTGACATCTACGGTACCGTTGATTTCATCTTCGGTAACGCCGCCGTCGTCTTACAAAACTGCAACATCTACGCCCGCCTTCCGCTGAGTGGCCAGTTCAACGCCGTCACAGCGCAAGGCCGAACCGACCCGAATCAAACACGGGAACCTCTATCCACAACTGCACCATCAAGGCGACGCCGGAGCTCGCGGCAAGCCCCGCCACTAAGAGCTACTTAG 996 49.1 MSAVITNEDTCYEGLAGLDSAVGLVDKVLEAISFDKKLYSLYLSLFKMGWVSKDLKAPTLPKMKHFGVGKGQLKLKMSPKDRAYYERLVHRNKPPGARRLLQTNYQDDGIVINGIVGVDQNGTYDFTNITAAIAAAPNKTTVAKGYFLIFVAAGIYNETVLIPKEKRYVLLIGEGNNQTIITGNKNVVDGSTTFNSATVAVEGTGFLGVNLTISNTAGAAKHQAVALRVSADNATLYNCIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYARLPLSGQFNAVTAQGRTDPNQTREPLSTTAPSRRRRSSRQAPPLRAT 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2579673 2582433 + MELO3C020953.2.1 Cme11g00219 340882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00219 331 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 1 306 - -
Cme11g00219 331 Pfam Pectinesterase 118 306 IPR000070 GO:0030599|GO:0042545
Cme11g00219 331 ProSitePatterns Pectinesterase signature 2. 262 271 IPR033131 -
Cme11g00219 331 MobiDBLite consensus disorder prediction 298 320 - -
Cme11g00219 331 Gene3D - 112 312 IPR012334 -
Cme11g00219 331 MobiDBLite consensus disorder prediction 298 331 - -
Cme11g00219 331 SUPERFAMILY Pectin lyase-like 112 306 IPR011050 -
Cme11g00219 331 PANTHER PECTINESTERASE 1 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00219 Cme-Chr11:2579673 Cme04g00242 Cme-Chr4:1915220 3.74E-112 dispersed
Cme11g00219 Cme-Chr11:2579673 Cme10g00186 Cme-Chr10:1255016 7.59E-83 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00219 K01051 - csv:101216984 580.096