Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00226 ATGAGAAATCATTCATCAAATTCATCATTGCTTCTCAGCTCCCTTTTTAAAAAAAAATCTTTTAGTTCGCTATCAGAAATTCCAGGAAAGACTATCATACAGTTGTCATCTTCTGAGGATATCAAGCACAACATCGATGCTTCTGTGGAAACCTCTTCTAAAGTGGCATGTCAGACCAACTTAGTTTCTTTAGAGTCCATTAATGGAAATTGTGATACCTCTCTCAATTCAGCTCTAACTGAAAGTCATGTGATAAACACTCTTTTAAACAGCAAAAGTGATCCAACGTCAGCATTGAAGTACTTCAAAAGGATTAAGAAGAAGATAGAATTTGCCAAATGCACTGATGCTGTATGTATCTTGCTTCTCATTTTGACAAATTCGGCAGAGACACATAGAGCTCAGTATTTGTTTGATCAATTTGCTTCAGGAAAATCAGTCCACCCTAGTTGTCTTATGGACCGTTTAGTGGAATGCACAAAACTGTACAGTTTTCCATTGGATATTCAGGTTTTTAATTATTTGTTGAAAAGTTACGTTAGAGCAAACAAAATTGAAGAAGCTCTTCATTGTTTTAATAAAATTGTAGAATTTGATATGACGCCATCAATTCAGTGTGTGAATATTCTTTTGACTGCCATGGTTAGGAAAAACATGACTTGTGAAGCACGGGAGTTGCATAACAAAATGTTGCTGATAGGAGTTTCAGGCGACTGTTTTACATTACATGTTATGTTGCATGCTTGTTTGAAGGAAGGGAATATTTTGGAGGCAGAGCAACATTTTTTACAAGCGAAAGCAAGAGGAGTGAAACTTGATCAAGAAGCTTATAGTACATTTGTTCGTCTAGTTTGTTTGAAACCAAACTCTGGTTATGCTTCATCTTTGTTAAGAGAGATGAGGGCAGCAGGTTGGGTTCCTTCCGAAGGTACATTTACAAGTGTTATTACTGCTTGTGTAAAGGAAGGGAATATGGCAGAGGCTTTGAGGCTGAAAGATGACATGGTTAATTGTGGACAGTTTATGAATTTGGCTGTTGCAACAAGTTTAATGAAGGGTTATTGCATGCAAGGAGACCTCGGAAGTGCTTTAGTTCTCGTGAATGAAATAAGCAAGAGTGGTTTGGTGCCCAACAAAGTTACATACTCGGTTCTGATTGATGGTTGTTGTAAGAATGGGAATATTGAAAAGGCATTTGAGTTTTTCTCTGAAATGAAAACTAAGGGCATTCAGCCAAGTGTTTATTCTTTGAATTCTATAGTAGAAGGGTATTTGAAATGTCACTCTTGGCAAAATGCATTCACGATGTTTAATGATGCACTTGAGAGTGGTCTTGCAAATGTTTTCACGTTTAATACTTTATTGTCCTCGCTTTGTAAGGAGGGTAAGATGAATGAAGCTTGCAATTTATGGGATGAGGTGATTGCTAAGGGTATCAGTCCTAATGTAGTTTCGTACAATAACATTATACTTGGTCACTGTAGAAAAGATAATATTAATGCAGCATGTAAGGTGTACAAGGAGATGCTAGATAATGGGTTTACCCCAAATGCAGTTACCTTTACTATTCTAATGGATGGTTATTTTAAGAAAGGGGATATCGAGAATGCTTTTAGTATATTTCACAGGATGAAAGATGCTAACATTCTACCCACAGACATCACATTAGGTATTATCATCAAAGGTTTGTGCAAAACTGGTCGAACCTCTGAGGGAAGGGATTTGTTCAATAAGTTTGTTTCTCAAGGCTTTATTCCTACTTGTATGCCTTACAATACTATTATTGATGGTTTCATCAAGGAAGGCAATATTAATTTGGCGTCGAATGTGTATAGGGAAATGTGTGAAGTAGGCATTACTCCTAGCACTGTCACCTATACATCCTTGATTGATGGATTTTGTAAAGGCAATAATATAGATCTTGCTTTAAAGTTGCTGAACGATATGAAAAGGAAGGGTCTTGAAATGGACATTAAAGCATATGGCACACTCATCGACGGTTTTTGCAAAAGAAGGGATATGAAAAGTGCGAACGAACTTCTTAACGAACTTCGGGGAGCTGGTTTATCTCCAAATCGTTTCATTTACAATAGCATGATTGCTGGGTTTAAGAATATGAACAACATAGAAGCAGCTATCGACTTATATAAGAATATGGTGAATGAGGGTATTCCGTGTGATTTGAAAACATATACCTCAATGATTGATGGATTGCTGAAAAATGGAAGACTTCTCTATGCATCAGATATCCACACCGAAATGCTTTCTAGGGGTATATTGCCTGATGATCGGGCACAAACGGTTCTAATCAATGGTCTTTGTAACAAAGGGCAATTTGAGAACGCACGCAAGATTTTGGAGGATATGAATGGAAAAAACATGATTCCTAGTGTTCTCATTTATAATACATTAATAGCTGGGCACTTTAAGGAAGGGAATTTGCAAGAAGCTTTTAGGTTGCATGATGAGATGCTTGATAGAGGTATTGTTCCTGATAATATTACCTATGATATTCTTGTCAATGGAAAGTTCAAAGGAGATGGTAATTTTAGTAGAGATTTGAGTTTCTAA 2571 36.64 MRNHSSNSSLLLSSLFKKKSFSSLSEIPGKTIIQLSSSEDIKHNIDASVETSSKVACQTNLVSLESINGNCDTSLNSALTESHVINTLLNSKSDPTSALKYFKRIKKKIEFAKCTDAVCILLLILTNSAETHRAQYLFDQFASGKSVHPSCLMDRLVECTKLYSFPLDIQVFNYLLKSYVRANKIEEALHCFNKIVEFDMTPSIQCVNILLTAMVRKNMTCEARELHNKMLLIGVSGDCFTLHVMLHACLKEGNILEAEQHFLQAKARGVKLDQEAYSTFVRLVCLKPNSGYASSLLREMRAAGWVPSEGTFTSVITACVKEGNMAEALRLKDDMVNCGQFMNLAVATSLMKGYCMQGDLGSALVLVNEISKSGLVPNKVTYSVLIDGCCKNGNIEKAFEFFSEMKTKGIQPSVYSLNSIVEGYLKCHSWQNAFTMFNDALESGLANVFTFNTLLSSLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDITLGIIIKGLCKTGRTSEGRDLFNKFVSQGFIPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLEMDIKAYGTLIDGFCKRRDMKSANELLNELRGAGLSPNRFIYNSMIAGFKNMNNIEAAIDLYKNMVNEGIPCDLKTYTSMIDGLLKNGRLLYASDIHTEMLSRGILPDDRAQTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQEAFRLHDEMLDRGIVPDNITYDILVNGKFKGDGNFSRDLSF 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2622146 2629508 + MELO3C020947.2.1 Cme11g00226 340889

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 797 831 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Cme11g00226 856 SUPERFAMILY HCP-like 92 271 - -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Cme11g00226 856 Gene3D Tetratricopeptide repeat domain 85 289 IPR011990 GO:0005515
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
Cme11g00226 856 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 41 849 - -
Cme11g00226 856 SUPERFAMILY HCP-like 390 620 - -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 378 412 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 447 473 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 374 406 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Cme11g00226 856 Gene3D Tetratricopeptide repeat domain 290 443 IPR011990 GO:0005515
Cme11g00226 856 Gene3D Tetratricopeptide repeat domain 706 850 IPR011990 GO:0005515
Cme11g00226 856 Pfam PPR repeat 241 270 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 311 339 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 591 619 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 555 584 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 171 198 IPR002885 -
Cme11g00226 856 Pfam PPR repeat 767 793 IPR002885 -
Cme11g00226 856 Gene3D Tetratricopeptide repeat domain 590 705 IPR011990 GO:0005515
Cme11g00226 856 Pfam PPR repeat family 796 842 IPR002885 -
Cme11g00226 856 Pfam PPR repeat family 691 740 IPR002885 -
Cme11g00226 856 Pfam PPR repeat family 481 528 IPR002885 -
Cme11g00226 856 Pfam PPR repeat family 621 670 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Cme11g00226 856 Gene3D Tetratricopeptide repeat domain 512 582 IPR011990 GO:0005515
Cme11g00226 856 Gene3D Tetratricopeptide repeat domain 444 511 IPR011990 GO:0005515
Cme11g00226 856 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 41 849 - -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 555 588 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 380 414 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 311 339 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 660 692 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 624 657 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 767 797 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 484 518 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 695 727 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 591 622 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 171 203 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 348 378 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 800 832 IPR002885 -
Cme11g00226 856 TIGRFAM PPR: pentatricopeptide repeat domain 730 762 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Cme11g00226 856 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00226 - - K15336 csv:101216262 1596.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01253 Cme-Chr9:17392999 Cme11g00226 Cme-Chr11:2622146 7.98E-65 dispersed
Cme11g00226 Cme-Chr11:2622146 Cme12g00356 Cme-Chr12:4896597 5.42E-65 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g536 Blo02g00788 . . Bda08g00906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone3ag1132 Cone10ag1142 Lsi10g00648 . . . . . . . . . . . . . . . . . . . . Bhi10g02041 . . . . . . . . . . . . . . . . Cme11g00226
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005083 1 7 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 5 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00226 Cme_Chr11 FPKM 0.606621 1.025496 2.666935 2.983047 6.007126 5.960574 7.089639 5.773813 5.380259 5.344899