Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00229 ATGTCATCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACACAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTCGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCTGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTATGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACTGATCTCTATAATGCTAAAAAGGAATTAGCTTCTTATATTGGTCCTCAAGCTATGCTTCCTATTCTCCAACCTCAAACCACTCCATCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGTCGGCCCATCCCCTTCCCCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACACCTGCTCATCATCATCATCACCACCATCATTTACAACAACAACAACAATTGTTCGAGGCACAACAATTGGCGGCGGCTGTTGCGGCGAGAGAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACAACAATCAAATGGGTGCTTCTAATTTGACATTGGGGACATTTGTGGATAATTCCTATCAACAAATTCAACAACATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAACAGCTCGAACAACAACATCATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAATAATAACAATATTAACATTGGTCCATCTTGTTAG 933 41.8 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIVGPSPSPSPSVPGSSQQMIIRDSAVTTPAHHHHHHHHLQQQQQLFEAQQLAAAVAAREEMFKAYEHKQSQQQQRQQELLSFNNNNNNQMGASNLTLGTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQPQQTQQLEQQHHHHHHQSHKPESTTHADDGRINNNNNINIGPSC 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2644836 2645768 - MELO3C020944.2.1 Cme11g00229 340892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00229 310 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cme11g00229 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 282 - -
Cme11g00229 310 Coils Coil 86 106 - -
Cme11g00229 310 MobiDBLite consensus disorder prediction 268 310 - -
Cme11g00229 310 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 282 - -
Cme11g00229 310 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cme11g00229 310 MobiDBLite consensus disorder prediction 294 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01206 Cme-Chr5:19496762 Cme11g00229 Cme-Chr11:2644836 8.43E-61 dispersed
Cme08g00105 Cme-Chr8:768543 Cme11g00229 Cme-Chr11:2644836 4.59E-44 dispersed
Cme11g00229 Cme-Chr11:2644836 Cme12g01670 Cme-Chr12:23697413 2.41E-49 dispersed
Cme11g00229 Cme-Chr11:2644836 Cme09g00420 Cme-Chr9:3984698 5.31E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42134 PF03195 LOB 1.70E-41 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00229 - - cmo:103497461 439.499