Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00229 | ATGTCATCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACACAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTCGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCTGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTATGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACTGATCTCTATAATGCTAAAAAGGAATTAGCTTCTTATATTGGTCCTCAAGCTATGCTTCCTATTCTCCAACCTCAAACCACTCCATCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGTCGGCCCATCCCCTTCCCCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACACCTGCTCATCATCATCATCACCACCATCATTTACAACAACAACAACAATTGTTCGAGGCACAACAATTGGCGGCGGCTGTTGCGGCGAGAGAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACAACAATCAAATGGGTGCTTCTAATTTGACATTGGGGACATTTGTGGATAATTCCTATCAACAAATTCAACAACATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAACAGCTCGAACAACAACATCATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAATAATAACAATATTAACATTGGTCCATCTTGTTAG | 933 | 41.8 | MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIVGPSPSPSPSVPGSSQQMIIRDSAVTTPAHHHHHHHHLQQQQQLFEAQQLAAAVAAREEMFKAYEHKQSQQQQRQQELLSFNNNNNNQMGASNLTLGTFVDNSYQQIQQHDHQNSSSHPLQVQLFLQPQQTQQLEQQHHHHHHQSHKPESTTHADDGRINNNNNINIGPSC | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2644836 | 2645768 | - | MELO3C020944.2.1 | Cme11g00229 | 340892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00229 | 310 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - | |
Cme11g00229 | 310 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 282 | - | - | |
Cme11g00229 | 310 | Coils | Coil | 86 | 106 | - | - | |
Cme11g00229 | 310 | MobiDBLite | consensus disorder prediction | 268 | 310 | - | - | |
Cme11g00229 | 310 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 282 | - | - | |
Cme11g00229 | 310 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 104 | IPR004883 | - | |
Cme11g00229 | 310 | MobiDBLite | consensus disorder prediction | 294 | 310 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme05g01206 | Cme-Chr5:19496762 | Cme11g00229 | Cme-Chr11:2644836 | 8.43E-61 | dispersed | |
Cme08g00105 | Cme-Chr8:768543 | Cme11g00229 | Cme-Chr11:2644836 | 4.59E-44 | dispersed | |
Cme11g00229 | Cme-Chr11:2644836 | Cme12g01670 | Cme-Chr12:23697413 | 2.41E-49 | dispersed | |
Cme11g00229 | Cme-Chr11:2644836 | Cme09g00420 | Cme-Chr9:3984698 | 5.31E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42134 | PF03195 | LOB | 1.70E-41 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00229 | - | - | cmo:103497461 | 439.499 |