Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00249 ATGACAGAACCCTCATGCATTGAGAAATCCCCAATTCCAAAACCCTCATCGGAACCACTCCAAATGGAAATCGACCATCCTTCCGCCCCCCAAATGTCGGAGATTTCTCAGTACGAGCAGTCCAGAGAGTTGAGAATCAGAGAAAACATGGAGCGCATGCAGAAGCTCGGGATCCTTGACCTCTCTCTCAAGCTCAAATCCTCAGCTCCCTCAAAGCAAAATCGCCGAAAATCACTTACCCCTAAAGCTTCTCCACCTTCCTTCGACCTCCCTCCGCCCGGACCCCTCCGCCGATCATCCAGGTTACAGAATGCGACGCCTGTTACTTACTCTGAACTGCGAATGGAGAGGAAAAACAAGTTCTCTGAGGATGAGGATGCGATTCTTGAAGACGGTTCGAGACCGGAGATATACACGGAAGAGCATGAGAAGATGTTGGGTTGTACAGAGAGGAGTTGGACGCTATTTGTGGATGGTTATGGTAAAGATGGGAAACGAATTTATGATCCAGTAAAGGGAAAGACTTGCCATCAGTGCAGGCAAAAAACATTGGGGTATCGTACTCATTGCAGCAAATGTAACATGGTTCAAGGACAATTTTGTGGTGATTGTCTGTATATGAGGTACGGAGAGCACGTTCTTGAAGCCCAACAAAACCCAGATTGGATTTGTCCCGTTTGTCGTGGAATTTGCAACTGCAGTTTATGTCGCCAAGGGAAAGGATGGCTTCCTACTGGGCCTTTGTATAAGAAGATAACGAGGATGGGATTCAAGTCTGTTGCGCACTTTCTCATCCAAACCAAACGTTCACAGCCAAGTTCAGAGGAGAATACTACTGATCTTGCTTCTGCAAAGAGGTCGTTGTCCTTCACAGATTTTGAAGTTAATCCTGATGCCGCTACTAAGGTTAATGATGATCTCCTAGAAACAATGGAGCCTCAAGCAGTGGATGTATCTGAAAATGAGAAGAAGAATATGCTACAGAGTATCTCCAGTAACGAGATTAAAGATCATATTTCTGTTAAGAGGTCGCTGAGCTTCTCAGGCCTGGAGCAGCAGGGCTCAAAAGACGCTAATCCTAATCATCTCAACCATGACGAACTATCACAACATCAATCTGCAAACCATGAACTTGGTGAAAACATCATTGATGAGAAAGAGAAGGAAATGGATTGCCACAAGAGAAAGAATGGTGATAACTACTGTCCTGATGAATGTCCATTGACCGAAAAGAAACCAACAATTACTGTAGAATCAAACACCATGGATCTGGGTTGTAGTACAGGCAATGACCACGAGAAAGAATCATCGGGAGTTCAAACAACAACATCGTCAACAGACCAAAGTGTGAAGCCTGATATTAGTACCCACACAAGCTCAGAAAGTATAGCTGAAGAATGTCTCCAAGAAGGCGGGATTCAAGAAAGTAACGGTAAAACATCAGATGAAGAAGGGTCAAATAGTTTGTCAAAGAAAAAAACAAAGGCCGGAGCAAAAATTTCAACCTCTTCAGAGGTAAAATCTTTAAGTAGCAATAGGGTTTTGCGGTCTAGGTTCAAAGCAATATAG 1569 44.04 MTEPSCIEKSPIPKPSSEPLQMEIDHPSAPQMSEISQYEQSRELRIRENMERMQKLGILDLSLKLKSSAPSKQNRRKSLTPKASPPSFDLPPPGPLRRSSRLQNATPVTYSELRMERKNKFSEDEDAILEDGSRPEIYTEEHEKMLGCTERSWTLFVDGYGKDGKRIYDPVKGKTCHQCRQKTLGYRTHCSKCNMVQGQFCGDCLYMRYGEHVLEAQQNPDWICPVCRGICNCSLCRQGKGWLPTGPLYKKITRMGFKSVAHFLIQTKRSQPSSEENTTDLASAKRSLSFTDFEVNPDAATKVNDDLLETMEPQAVDVSENEKKNMLQSISSNEIKDHISVKRSLSFSGLEQQGSKDANPNHLNHDELSQHQSANHELGENIIDEKEKEMDCHKRKNGDNYCPDECPLTEKKPTITVESNTMDLGCSTGNDHEKESSGVQTTTSSTDQSVKPDISTHTSSESIAEECLQEGGIQESNGKTSDEEGSNSLSKKKTKAGAKISTSSEVKSLSSNRVLRSRFKAI 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2812747 2815558 - MELO3C020926.2.1 Cme11g00249 340912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00249 522 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 168 264 IPR018866 -
Cme11g00249 522 PANTHER ZINC-FINGER DOMAIN OF MONOAMINE-OXIDASE A REPRESSOR R1 21 466 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 420 512 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 67 81 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 349 375 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 420 465 - -
Cme11g00249 522 PANTHER OS05G0300700 PROTEIN 21 466 IPR040221 GO:0006355
Cme11g00249 522 MobiDBLite consensus disorder prediction 67 111 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 1 39 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 360 375 - -
Cme11g00249 522 MobiDBLite consensus disorder prediction 491 512 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00249 K23408 CDCA7, CDCA7L, JPO1; cell division cycle-associated protein 7 - csv:101213938 863.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00249 Cme-Chr11:2812747 Cme11g00495 Cme-Chr11:4938683 1.13E-104 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g501 . . . . . . . . . . Cma02g00432 . Car02g00287 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00320 . Chy11g00426 . . . . . . . . . . Cmo02g00434 . . . . . . Cpe05g01230 . . . . . . . Cla09g01728 Cam09g1822 Cec09g1882 Cco09g1975 . . Cre01g0686 . Csa02g01209 . Cme11g00249
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008886 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00249 Cme_Chr11 FPKM 4.737911 4.559334 0.583717 0.578171 13.363134 15.190797 13.167287 0.0 0.0 0.0