Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00273 ATGGATACCTTGTTAAGGTTGGTCAATGATCTTGGATCCTCTGATCAATATTCTTATAACAATAATTCAAGCAGCAGCTCAAAGAATTCTAGTGATCGAAATCATTATAATTACTATCTTCAAAACCCACAATCTCAAGAATGTTTCAACAATTCGTTCATGGAGGATGAAGATCATTTCTCTGCATCCTCTTCTTCAAGTCACCACCACCACCACCAACTCCGGCAGCTTCAATGTTCCACCACCACGACAAGTACTACATCCACCGTAGTTGGTCTAATGGCTAAACTCTTGTATTTAGATGATGGGTTAAGTGCTGCTGCTCCAGTTGATCACGACCTAAACTTTGAACTCTCTGAAGAATGGGCTTCTACAGTACTCCTCCAAACAGCTATCGCTATCGTCAACAAGAACACTACTCGAATCCAACACCTTATGTGGGTGTTGAATGAGCTTGGTTCTCCATATGGCGACATTGATCAAAAGCTAGCGTTCTACTTCCTTCAAGGCATGTTCAGTCGCGTCACCGACTCAGGTGCCAAGTGCTACAGAACCTTGGCAGCAGCATTGGAGAAACAGTCGTGTTTTGGGTCGATGAGAAGAATGGTGTTGAAGTTTGAGGAGGTGAGTCCATGGATGAGATTTGGCCATGTTGCTTCAAATGGCTCCTTAATGGAAGCTTTACGAGGTGAAAAGAAGTTGCATATAATTGATATTCCTGGAAGTTACTCCTCATTTTGCACTCAATGGCCAACTTTTATTGAAGCTTTGGCAACACAATCGGACCAAACTCCGCACCTTACTCTAACAACCTTGGTTGCAGCCAAATCGGAAGGAACCCTACGAGCTCATAAGAAACTGATGAAAGAAATAAGTAGAAGACTAGAGAAATTCGCAAGGCTTATGGGAATTTCCTTCAAATTCAAACCCATTTTCCACTACGGCGACGTTTCACACTTCGATTTCACACATTTACCCCTCAAACACGACGAGGCCGTCGCCGTCAACTGCTCCGGTGCCTTGCGCTCCGTCGCCCCCCTCCACAACCGCCGCGATTTTCTCATATCCTTATTTCGATCTTTGCGGCCCAAGATTATCACCGTCGTAGAGGAGGAAGCCGATCTCAACGCCGACGGCGGCGCCGACGACTTTTTCAAACACCTTCAGGAGTGTTTACGGTGGTTTAGGCTTTACTTTGATTCCTTGGACGGAAGTTTCCCGATCGTCACTGATGAGAGGTTAATGCTTGAACGCGCAGCTGGACGCTCCGTAGTGGACTTGCTTGCATGCGGGCTGGCGGAATCGGTGGAGAGGCGTGAGACGGCGGTGCGTTGGACGCGTCGTTTGCATGACGGTGGTTTTAAACCGGTGTCGTTTAGTGAGGATGTAAATGATGATGTACGCGCGCTTTTGAGGAGGTACAAGGATGGGTGGACAGTGATGGACGGCGACGGAGCCGGAGCCGGGATGTTCTTGGCTTGGAAGGGGCAGCCGGTGGTTTGGGCCGCCGCGTGGGTGCCTGGACAGGTAGACGGAGAGAAGACACACGTGTAA 1554 48.07 MDTLLRLVNDLGSSDQYSYNNNSSSSSKNSSDRNHYNYYLQNPQSQECFNNSFMEDEDHFSASSSSSHHHHHQLRQLQCSTTTTSTTSTVVGLMAKLLYLDDGLSAAAPVDHDLNFELSEEWASTVLLQTAIAIVNKNTTRIQHLMWVLNELGSPYGDIDQKLAFYFLQGMFSRVTDSGAKCYRTLAAALEKQSCFGSMRRMVLKFEEVSPWMRFGHVASNGSLMEALRGEKKLHIIDIPGSYSSFCTQWPTFIEALATQSDQTPHLTLTTLVAAKSEGTLRAHKKLMKEISRRLEKFARLMGISFKFKPIFHYGDVSHFDFTHLPLKHDEAVAVNCSGALRSVAPLHNRRDFLISLFRSLRPKIITVVEEEADLNADGGADDFFKHLQECLRWFRLYFDSLDGSFPIVTDERLMLERAAGRSVVDLLACGLAESVERRETAVRWTRRLHDGGFKPVSFSEDVNDDVRALLRRYKDGWTVMDGDGAGAGMFLAWKGQPVVWAAAWVPGQVDGEKTHV 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2969573 2973367 - MELO3C020907.2.1 Cme11g00273 340936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00273 517 PANTHER PROTEIN SHORT-ROOT 1 506 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cme11g00273 517 MobiDBLite consensus disorder prediction 16 37 - -
Cme11g00273 517 Pfam GRAS domain family 125 505 IPR005202 -
Cme11g00273 517 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 506 IPR005202 -
Cme11g00273 517 ProSiteProfiles GRAS family profile. 114 506 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00647 Cme-Chr8:4237066 Cme11g00273 Cme-Chr11:2969573 0 dispersed
Cme11g00273 Cme-Chr11:2969573 Cme11g02451 Cme-Chr11:31236842 1.15E-131 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42141 PF03514 GRAS 2.90E-88 CL0063 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00273 - - csv:101210294 891.723