Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g00295 | ATGGACGATATCGACATTCTGAAATCCACACTCTCCCCATCCGACATGTCGTCCACATTCTTCCCAAACAATTGTCCTCAACTACTCCCAGTAATCCCACCGCCTTATTTCTCCGATTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCGGAAGCTCCGGCGCGGCAGAGGCGGAGCGGGGTAAGTGGGGGAGGAATGGCGGCGATGAGGGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACAGGCGGGAAAGGATTAGCCAGAAAATAAGGATTCTGCAGCGGCTGGTGCCCGGGGGGACGAAGATGGATACGGCGTCGATGCTGGACGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAAGCTGGGTTTAATTATAATAATAATAATAATAACAACAACAATAATAACAATTTTAATAATTTTGTTAATTCGGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCATGA | 639 | 49.14 | MDDIDILKSTLSPSDMSSTFFPNNCPQLLPVIPPPYFSDYSPPPGTSLFQTTPTIIPEAPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3162208 | 3163000 | + | MELO3C020892.2.1 | Cme11g00295 | 340958 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g00295 | 212 | Gene3D | - | 105 | 181 | IPR036638 | GO:0046983 | |
Cme11g00295 | 212 | Pfam | Helix-loop-helix DNA-binding domain | 115 | 155 | IPR011598 | GO:0046983 | |
Cme11g00295 | 212 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 70 | 210 | IPR045843 | GO:0003700|GO:0006355 | |
Cme11g00295 | 212 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 110 | 165 | IPR036638 | GO:0046983 | |
Cme11g00295 | 212 | Coils | Coil | 145 | 165 | - | - | |
Cme11g00295 | 212 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 106 | 155 | IPR011598 | GO:0046983 | |
Cme11g00295 | 212 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 70 | 210 | - | - | |
Cme11g00295 | 212 | SMART | finulus | 112 | 161 | IPR011598 | GO:0046983 | |
Cme11g00295 | 212 | CDD | bHLH_AtIND_like | 107 | 163 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme01g02870 | Cme-Chr1:35499951 | Cme11g00295 | Cme-Chr11:3162208 | 6.37E-40 | dispersed | |
Cme03g02055 | Cme-Chr3:28033407 | Cme11g00295 | Cme-Chr11:3162208 | 2.00E-52 | dispersed | |
Cme08g01078 | Cme-Chr8:7087227 | Cme11g00295 | Cme-Chr11:3162208 | 7.06E-47 | dispersed | |
Cme08g02188 | Cme-Chr8:27903362 | Cme11g00295 | Cme-Chr11:3162208 | 1.23E-24 | dispersed | |
Cme11g00295 | Cme-Chr11:3162208 | Cme01g00118 | Cme-Chr1:844087 | 2.96E-17 | dispersed | |
Cme11g00295 | Cme-Chr11:3162208 | Cme07g00345 | Cme-Chr7:2214088 | 4.62E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42143 | PF00010 | HLH | 8.00E-07 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g00295 | - | - | cmo:103497414 | 321.242 |