Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00295 ATGGACGATATCGACATTCTGAAATCCACACTCTCCCCATCCGACATGTCGTCCACATTCTTCCCAAACAATTGTCCTCAACTACTCCCAGTAATCCCACCGCCTTATTTCTCCGATTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAACAATAATCCCGGAAGCTCCGGCGCGGCAGAGGCGGAGCGGGGTAAGTGGGGGAGGAATGGCGGCGATGAGGGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACAGGCGGGAAAGGATTAGCCAGAAAATAAGGATTCTGCAGCGGCTGGTGCCCGGGGGGACGAAGATGGATACGGCGTCGATGCTGGACGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACGCTGGAGCAAGCTGGGTTTAATTATAATAATAATAATAATAACAACAACAATAATAACAATTTTAATAATTTTGTTAATTCGGCGAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCATGA 639 49.14 MDDIDILKSTLSPSDMSSTFFPNNCPQLLPVIPPPYFSDYSPPPGTSLFQTTPTIIPEAPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3162208 3163000 + MELO3C020892.2.1 Cme11g00295 340958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00295 212 Gene3D - 105 181 IPR036638 GO:0046983
Cme11g00295 212 Pfam Helix-loop-helix DNA-binding domain 115 155 IPR011598 GO:0046983
Cme11g00295 212 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 70 210 IPR045843 GO:0003700|GO:0006355
Cme11g00295 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 165 IPR036638 GO:0046983
Cme11g00295 212 Coils Coil 145 165 - -
Cme11g00295 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 155 IPR011598 GO:0046983
Cme11g00295 212 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 70 210 - -
Cme11g00295 212 SMART finulus 112 161 IPR011598 GO:0046983
Cme11g00295 212 CDD bHLH_AtIND_like 107 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02870 Cme-Chr1:35499951 Cme11g00295 Cme-Chr11:3162208 6.37E-40 dispersed
Cme03g02055 Cme-Chr3:28033407 Cme11g00295 Cme-Chr11:3162208 2.00E-52 dispersed
Cme08g01078 Cme-Chr8:7087227 Cme11g00295 Cme-Chr11:3162208 7.06E-47 dispersed
Cme08g02188 Cme-Chr8:27903362 Cme11g00295 Cme-Chr11:3162208 1.23E-24 dispersed
Cme11g00295 Cme-Chr11:3162208 Cme01g00118 Cme-Chr1:844087 2.96E-17 dispersed
Cme11g00295 Cme-Chr11:3162208 Cme07g00345 Cme-Chr7:2214088 4.62E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42143 PF00010 HLH 8.00E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00295 - - cmo:103497414 321.242