Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00303 ATGGGGATTTGTGTGTCGTCTGATTCTACCAACGTTGCTACAGCGAAATTGATTCTTATTGATGGAACATTGGTTGAGTATTCATACCCGGTTAAAGTTTCTTACGTCCTACAAAAACATCCGTCGAGTTTTATCTGCAACTCGGACGATATGGATTTCGACGACGTCGTTTACGCCGTTGACGAAGACGACGAGCTTCAACTCGGGCAGCTTTACTTTGCTTTACCGTTGGAGAGGCTGAATCAGCGGATGCAGGCGGAGGAAATGGCAGCATTGGCGGTTAAGGCGAGTTCGGCGCTAATGAAGGGCGGAGGTGGTGGTGGGATGGAGAAATGTGGATCTAAAGGGACGGCGGTTATTCCGGTGGGAAATTGCGAGGAGGAGGAGGGGTTTAGGAAGGAACCGAGAAAGGGGGGTTTGAAGAAGAAGGGTGGAAGTAGGAAATTTAGGGCGAAGTTGAGTGCAATTCCGGAATAA 477 49.06 MGICVSSDSTNVATAKLILIDGTLVEYSYPVKVSYVLQKHPSSFICNSDDMDFDDVVYAVDEDDELQLGQLYFALPLERLNQRMQAEEMAALAVKASSALMKGGGGGGMEKCGSKGTAVIPVGNCEEEEGFRKEPRKGGLKKKGGSRKFRAKLSAIPE 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3252806 3253537 + MELO3C020884.2.1 Cme11g00303 340966

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00303 158 MobiDBLite consensus disorder prediction 128 158 - -
Cme11g00303 158 PANTHER HTH-TYPE TRANSCRIPTIONAL REGULATOR 1 158 - -
Cme11g00303 158 Pfam PADRE domain 1 158 IPR025322 -
Cme11g00303 158 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00303 - - - csv:101206880 248.825
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g00043 Cme11g00303 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00009 Cme-Chr7:116503 Cme11g00303 Cme-Chr11:3252806 2.92E-20 dispersed
Cme08g00515 Cme-Chr8:3204025 Cme11g00303 Cme-Chr11:3252806 2.67E-57 dispersed
Cme11g00303 Cme-Chr11:3252806 Cme11g00310 Cme-Chr11:3288727 2.31E-17 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g423 . . . . . . . . Cmo19g00627 Cmo11g01358 . . . . Sed05g3402 Cpe04g00276 Cpe15g00493 Bhi05g01126 Tan02g0902 Cmetu11g1775 . Hepe02g0581 . . Cla02g00595 Cam02g0624 Cec02g0624 Cco02g0639 Clacu02g0628 Cmu02g0624 Cre02g0948 Cone11ag0284 . . . . Csa07g00766 . Cme01g00043 . . . . . . . . . Cmo02g00564 . . Cma19g00609 Car11g01088 . . . . . . . . . . . . . . . . . . . Chy01g00049 Cme11g00303
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001488 0 2 2 7 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00303 Cme_Chr11 FPKM 6.213889 6.99728 3.259959 3.235441 36.44751 32.422573 35.683819 1.10745 1.419674 1.622806