Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00313 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCGGCGGCCGCGGCAGCAGCAGCAGCAGCGGCAGGTTTCTTCACGCCGTTTTCCAATGGCTTTGATAGATCTTCCACAACTCATCACCAAGACTCACAACAACATTACCAACACATAGCTCACCAGATCCGTAAAGAGAAACTCCGCCTCCAAGGCGGCTACGACGCGCCGCCGCATCCACCGTCGTTAGTTGGAATCGACGATGACGACGACAACAACGACGACCAATCCGCTGTCCATCACGTTTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTTCCACCACAACCGCCACCGCCACCTCCGCAGACTGATTGGTACAGTAACAGACAAACAATCAACGCCACGGATTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCTCGGTCGCCATCTCCGCCACCACCGTCGTCGTCGACACTCCACATGCTTCTTCCAAACCCTTCTTCAGGAGGGTCTTATGGACAATTCACATGGGGGGTGGTGCCGGAGCAAGAAACAAATAATGACCATTCTTCATCAAACCCTAATGAAGGTCGTCTTTCATTGTCATTGTCATCTTCTTTGGAAGCTGCAAAAGCTGAGGAATTGAGAATGGGCGACAGCACCAATGGGTTGCTTTATCATCACCACCATCACCCTCATGTCGGAATTGGGTCCTCCAATCCATTGGGAGTTGTCAACTTATTGAGAAATTCAAAGTACATTAAAGCTACTCAAGAATTATTAGAGGAATTTTGTAGCGTTGGAAGAGGTCAATTTAAGAAGAACAATCATCATAATAAATCAAATTTGCCCTCCAATTCTAACTCCCATGGTGGCGGTGGAGGCGACGGTGCCGGAGTTTCTTCATCTTCAACAAAGGATCATCAACCATCTTTGTCAGCAACTGATAGGATTGAACATCAAAGGAGAAAGGTCAAATTGTTATCTATGCTTGATGAGGTTGATCGAAGATATAATCATTATTGTGAGCAAATGCAAATGGTGGTGAATTCATTCGACGAGGTGATGGGATTCAGGGCAGCAGTGCCATACACGGCGTTGGCGCAGAAGGCAATGTCGAGGCATTTTCGATGTTTAAAGGATGCAATATCATCACAGCTGAGGCATAGTTGCGAGATGTTGGGGGAGAAAGATGGGGGAGTAACTGGTAGAGCTTCGGGAATAACAAAGGGAGAGACTCCTAGACTTAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCGTTCCATCAAATGGGTATTATGGAACAAGAAGCTTGGCGTCCTCAACGCGGCTTGCCTGAACGCTCTGTCAATATCTTACGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTATCCTAGTGATGCTGATAAACATTTGTTAGCTAGACAGACTGGTTTGTCAAGAAATCAAGTATCAAATTGGTTCATTAATGCCAGGGTTCGTTTGTGGAAACCCATGGTAGAAGAAATGTACCAACAAGAAGCCAAAGATGATGACGATGACGACGATCATAATAACAACAACAATAGTAGTAGTAATAATAATAATAATAATAACAACAATAATAATACCACCGATGATGAAGAAGACACACAAACCAACAACCATCAACAAATAATGAATCCCCTTTCACAAACTCCAACGCCACAGCCACAGCCACAGCCGCAGCCGCAGCCTCATCTTCCTCCTTCGTCCTCCGCCGCGGTGGGGCAGTCGTATCCGGCGAACAATTATGAGACAGAGCTGCAGGACACGTGTCGGCGTGTCAGCGTTCTGGCTGCACCTGATCTTCAATTCGGGACCACAAATGGTGCTGCCACGTCTGACATGGAAGGGCCCACCACTCTCATAAGGTTCGGGACCACCATCGCCGCCACCACCACCACCACCGGTGACGTGTCGCTCACACTAGGTTTACGCCACGCCGGAAATATCCCCGATCAATCCTCACCCTTCACCCTCAGATCCGAGTTTGGAGGCTGTTAA 2025 48.0 MSQQDYQQAAAAAAAAAAAAAAGFFTPFSNGFDRSSTTHHQDSQQHYQHIAHQIRKEKLRLQGGYDAPPHPPSLVGIDDDDDNNDDQSAVHHVYDSTGILSEMFNFPPQPPPPPPQTDWYSNRQTINATDSAVAMQLFLMNPNPRSPSPPPPSSSTLHMLLPNPSSGGSYGQFTWGVVPEQETNNDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYHHHHHPHVGIGSSNPLGVVNLLRNSKYIKATQELLEEFCSVGRGQFKKNNHHNKSNLPSNSNSHGGGGGDGAGVSSSSTKDHQPSLSATDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFRAAVPYTALAQKAMSRHFRCLKDAISSQLRHSCEMLGEKDGGVTGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKDDDDDDDHNNNNNSSSNNNNNNNNNNNTTDDEEDTQTNNHQQIMNPLSQTPTPQPQPQPQPQPHLPPSSSAAVGQSYPANNYETELQDTCRRVSVLAAPDLQFGTTNGAATSDMEGPTTLIRFGTTIAATTTTTGDVSLTLGLRHAGNIPDQSSPFTLRSEFGGC 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3310166 3316349 - MELO3C020878.2.1 Cme11g00313 340976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00313 674 CDD homeodomain 438 499 IPR001356 GO:0003677
Cme11g00313 674 MobiDBLite consensus disorder prediction 559 575 - -
Cme11g00313 674 MobiDBLite consensus disorder prediction 507 585 - -
Cme11g00313 674 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 661 - -
Cme11g00313 674 MobiDBLite consensus disorder prediction 62 89 - -
Cme11g00313 674 SMART prehox3 240 383 IPR006563 -
Cme11g00313 674 Gene3D - 441 503 - -
Cme11g00313 674 MobiDBLite consensus disorder prediction 275 309 - -
Cme11g00313 674 SMART HOX_1 438 502 IPR001356 GO:0003677
Cme11g00313 674 Pfam Associated with HOX 246 382 IPR006563 -
Cme11g00313 674 MobiDBLite consensus disorder prediction 273 317 - -
Cme11g00313 674 MobiDBLite consensus disorder prediction 520 558 - -
Cme11g00313 674 MobiDBLite consensus disorder prediction 143 157 - -
Cme11g00313 674 MobiDBLite consensus disorder prediction 101 121 - -
Cme11g00313 674 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 79 661 - -
Cme11g00313 674 Pfam Homeobox KN domain 455 494 IPR008422 GO:0003677|GO:0006355
Cme11g00313 674 SUPERFAMILY Homeodomain-like 439 505 IPR009057 -
Cme11g00313 674 ProSiteProfiles 'Homeobox' domain profile. 435 498 IPR001356 GO:0003677
Cme11g00313 674 MobiDBLite consensus disorder prediction 140 163 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00510 Cme-Chr8:3146484 Cme11g00313 Cme-Chr11:3310166 2.94E-161 dispersed
Cme09g01786 Cme-Chr9:22302206 Cme11g00313 Cme-Chr11:3310166 1.51E-96 dispersed
Cme11g00154 Cme-Chr11:1651284 Cme11g00313 Cme-Chr11:3310166 3.31E-85 dispersed
Cme11g00313 Cme-Chr11:3310166 Cme12g00421 Cme-Chr12:6337581 6.92E-78 dispersed
Cme11g00313 Cme-Chr11:3310166 Cme04g02323 Cme-Chr4:30173085 1.84E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42145 PF07526 POX 4.70E-52 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00313 - - csv:101212977 1056.59