Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00336 ATGGAGTGGGTTCGAGGGGATCAACTCGGCCGTGGAAATTTTGCTACAATCAGTTTAGCAAAATTAACTAAAGGGTTCGATCAGTTCCCGCCATTAATGGCGGTCAAATCCTCTGTTTCTTCTCTATCCTCTGTTTCACTCAAGAACGAGAAGCAAATTCTTGATCGAATTGGGGTTTGCCCACAGATTATTACTTGTTATGGCGATGGATTCAGTGTTGAAAAAGATGGGGATAAGTATTATAATTTGTTCTTGGAGTATGCTAATGGCGGAAGTCTTGCGGATGTTGTGAGAACCCATGGCGGTGGGTTGTCGGAATTTGATGTTCGAAGGTATACGAGAGCGATTCTTTATGGCCTACGGCATGTTCATGGCAATGGGTTTGTTCATTGTGATTTAAAGCTTTCGAATGTGTTGATTTTTGGGAATGGTGAAGTTAAGATCGCGGATTTTGGGCTTGCTAAATCGGCTGGAAAATTTGGGGCGGTGGAAACAGAGGAGAGATTTGAATGGAGAGGGACTCCGATGTATATGTCGCCGGAGATTGTAAACGACGGTGAGTATGAGTCACCGTGTGATATTTGGGCGTTGGGTTGCGCCGTCGTGGAGATGGTGGTTGGAAAGCCGGCGTGGAGGGTCGGGCCGGGAACGGATATGTTTGGCTTGATGATGAGGATTGGAGTCGGAGATGAAGTACCGGAGACACCAGAGAATTTATCGGCGGAGGGGAAAGATTTTATCCGGCGGTGTTTTGTTAAGGATCCAAGTAAGAGATGGACGGCGGAGATGCTTTTGAATCACCCATTCGTTGTCGCCGGTGCCGGTGATACTACTGTTACATTGAAGGAAGTAGAATTGACAACGGAGTCACCCACGGGGCCTTTCGACTTCCCGGAATTCGTTTGTTCCGGCCAAGGTTCGGATGAGTGGAGTTTTTGTTCTTCTAGTTCGTCGCCGGAGGTGTTGAGTAGGGTCCGGCATCTGGTGACGGGGAAGCCTTTGGATTGGTCTGTCATGGATAGTTGGGTGACAGTTAGGTGA 1041 47.84 MEWVRGDQLGRGNFATISLAKLTKGFDQFPPLMAVKSSVSSLSSVSLKNEKQILDRIGVCPQIITCYGDGFSVEKDGDKYYNLFLEYANGGSLADVVRTHGGGLSEFDVRRYTRAILYGLRHVHGNGFVHCDLKLSNVLIFGNGEVKIADFGLAKSAGKFGAVETEERFEWRGTPMYMSPEIVNDGEYESPCDIWALGCAVVEMVVGKPAWRVGPGTDMFGLMMRIGVGDEVPETPENLSAEGKDFIRRCFVKDPSKRWTAEMLLNHPFVVAGAGDTTVTLKEVELTTESPTGPFDFPEFVCSGQGSDEWSFCSSSSSPEVLSRVRHLVTGKPLDWSVMDSWVTVR 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3494281 3495321 - MELO3C020859.2.1 Cme11g00336 340999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00336 346 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 323 - -
Cme11g00336 346 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Cme11g00336 346 SUPERFAMILY Protein kinase-like (PK-like) 3 302 IPR011009 -
Cme11g00336 346 Gene3D Transferase(Phosphotransferase) domain 1 2 292 - -
Cme11g00336 346 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00336 346 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 323 - -
Cme11g00336 346 CDD STKc_MAPKKK 2 270 - -
Cme11g00336 346 Pfam Protein kinase domain 5 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00336 346 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00336 346 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02532 Cme-Chr1:33287824 Cme11g00336 Cme-Chr11:3494281 1.95E-58 dispersed
Cme04g01934 Cme-Chr4:27030465 Cme11g00336 Cme-Chr11:3494281 7.67E-54 dispersed
Cme04g01997 Cme-Chr4:27570620 Cme11g00336 Cme-Chr11:3494281 5.69E-06 dispersed
Cme11g00336 Cme-Chr11:3494281 Cme11g00827 Cme-Chr11:10812050 3.36E-60 dispersed
Cme11g00336 Cme-Chr11:3494281 Cme08g00577 Cme-Chr8:3655913 1.43E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65227 PF00069 Pkinase 8.20E-53 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00336 - - csv:101214756 632.484