Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00342 ATGGAAGCTAATATTTATGATCTTAAGGTGCCACTAAATCCAAGGGACCTCAATTATGAACACAGAATAATAGATACCATAGAAGCCGGAGGATTCCCCGCCGACGAATTTTCCGACCAAGCCATTACATCAACATGTCGTCTAAGAATCTCCCGAATCTTCTGTCCAGCCAAACTCCGATCTCTTCAAAAAACCCTAGCCATGGTCCACGGCGTAAAACGAGCAACCGTACATCTCGAATTCAAAGAAGCCAAAGTCCTGTTCGATCCAAATTTAACTACAGAAACCCTAATCCTCAAAGCAATCGCGGATATCGGCTTCGAAGCCGATCTCATCTCCGCCGGAGACGAAGCCTACATAGTTCACTTAAAACTGGATCGAGCCAGCCGCGGAGATATGGGCGCCATAAAATCCTCTCTGGAGCAAGCTGATGGAGTAACTTCAGTTGAAATGGAAGCGGTAGAGCGGATGGTGAAGGTGGGGTACGACCCTGATCGGACGGGTCCAAGATCGATATTGCAGTTCTTGAAGAAGTACGGAGCAAGGTTGTACGTGCCTCCAAAGAGAAGAGATGTGGAGCAGCATCAAGAAGCTTGTGCTTATAGGAATTTGTTCTTGTTTAGCTGCTTGTTTTCCGTTCCGGTAGTGGCTTTCGCAATGGTGCTTCCAATGCTTCCTCCTTATGGAGATTGGTTGAATTTTAGGGTTTGCAAGATGCTCACCATTGGAATGGTTCTTAAATGGATCTTCTGCACTCCAGTCCAGTTCCTTGCCGGTGGCAGATTTTATGTAGGATCGTACCGTGCATTACAACGAAAATCTGCAAATATGGATGTTTTGGTTGCTGTAGGCACCAATGCAGCTTACTTTTACTCGGTATACATAGTATTTAAAGCATCCACTTCCAACTCTTTTAAGGGGAAAGATTTCTTTGAGACTAGCTCCATATTGATATCCTTCATTCTACTTGGAAAATATTTGGAGGTCATGGCCAAAGGCAAATCATCTGATGCTTTAGGAAAGCTAGCTCATCTTGCTCCGGACACGGCTTGTTTGATGACCTTTGATGATAATGGAAGTTTGCTGTCGGAGGTGGAGATTGATACCCAACTCATACAGAGAAATGACATAATTAAGATTGTTCCGGGTGCAAAAGTTCCTGTTGATGGGATTGTTATTGGTGGTGAAAGTAATGTGAATGAGAGTACAATTACAGGAGAAGCAAGATCCATTGGCAAATCAACTGGAGATAAGGTTATTGGAGGAACTGTCAATGAGAATGGAATCTTGTTTGTTAAGACCACCCATGTTGGAACTGATACTACACTTTCTCGAATTGTACAACTAGTGGAATCAGCGCAGCTATCACGAGCACCAGCTCAAAAATTAGCAGATCAGATATCAAAGTTCTTTGTTCCTGTTGTTGTTGTGGCAGCATTTGTTACATGGGTTGGATGGTTAATTTGTGGAGAAATTGGTTTATACCCCAAACATTGGATACCAAAAGGCATGGATGAGTTCGAACTTGCACTGCAGTTTGCCATTTCAGTGCTGGTGATTGCATGCCCTTGTGCCCTTGGCTTAGCAACGCCGACTGCGATCATGGTTGCATCAGGAAAGAGTGCTTCTTTAGGCGTGCTCATTAAAGGGGCAAGTGCACTTCAAAATGCATACAAGGTGAAAACGGTAGTTTTTGACAAGACTGGAACTCTAACAGTTGGGAGGCCAGAGGTAGTTAGTGTTGTGCTTTTCTCTACATTTCCAATGCTGGAGGTTTGTGATGCAGCAATAGCAATTGAGTCAAACAGCGAACACCCTTTTGCAAAGCCTATAGTGGAGCATGCAAAGAAAATGAGAAAGAAGTTCGGGGCTCGAAGCGAATGTTCCAAACGCGTCCAGAACTTCGAGGTGTTCCCGGGAGGAGGGGTTGGAGGAAAAATTGATAGAAAGACAGTTTTAGTAGGAAACAAAAGGCTAATGCGAGTTCACAATGTTGATATTACTCCTCAAGTTGATCGGTATACCATAGAAAACGAGCGACTGGCTCAAACATGTGTCTTGGTAGCTATTGATGGCAAGATAGCTGGAGGTTTTGGCGTTTTGGATGCACCAAAGCCGGGTACTAAAGCTGTCATATCATTTCTTCGCTCGATTGGCATCTCAACCATAATGATCACTGGAGATAACTTGGCCACAGCCTTCGCCGTTGCAAGAGGGGTCGGGATTAATAAAGTCTTTGCAGAGATGGATCCAATTGAAAAGGCTAACCAGATTAGATCCTTAAAGTCGACAGGCAATATTGTGGCAATGGTGGGAGATGGAGTAAACGACTCACATGCCTTAGCTGCAGCTGATGTTGGTATTGCAATTGGTGCTGGAACCAATATTGCTATAGAAGCAGCTGATATTGTTCTAATGCGAAGCAATTTAGAAGATGTGGTTACTGCCATAGATCTCTCAAGACAAACAGTTTATCGTATATGGCTTAACTACATCTGGGCTCTTGGCTATAATATCATCGGCATGCCTATCGCTGCCGGAATCCTATATCCTTTCTTCGGAATCCGATTGCCACCGTGGCTTGCCGGTGCCTGCATGGCTGCTTCCTCCCTTAGTGTTGTA 2622 44.28 MEANIYDLKVPLNPRDLNYEHRIIDTIEAGGFPADEFSDQAITSTCRLRISRIFCPAKLRSLQKTLAMVHGVKRATVHLEFKEAKVLFDPNLTTETLILKAIADIGFEADLISAGDEAYIVHLKLDRASRGDMGAIKSSLEQADGVTSVEMEAVERMVKVGYDPDRTGPRSILQFLKKYGARLYVPPKRRDVEQHQEACAYRNLFLFSCLFSVPVVAFAMVLPMLPPYGDWLNFRVCKMLTIGMVLKWIFCTPVQFLAGGRFYVGSYRALQRKSANMDVLVAVGTNAAYFYSVYIVFKASTSNSFKGKDFFETSSILISFILLGKYLEVMAKGKSSDALGKLAHLAPDTACLMTFDDNGSLLSEVEIDTQLIQRNDIIKIVPGAKVPVDGIVIGGESNVNESTITGEARSIGKSTGDKVIGGTVNENGILFVKTTHVGTDTTLSRIVQLVESAQLSRAPAQKLADQISKFFVPVVVVAAFVTWVGWLICGEIGLYPKHWIPKGMDEFELALQFAISVLVIACPCALGLATPTAIMVASGKSASLGVLIKGASALQNAYKVKTVVFDKTGTLTVGRPEVVSVVLFSTFPMLEVCDAAIAIESNSEHPFAKPIVEHAKKMRKKFGARSECSKRVQNFEVFPGGGVGGKIDRKTVLVGNKRLMRVHNVDITPQVDRYTIENERLAQTCVLVAIDGKIAGGFGVLDAPKPGTKAVISFLRSIGISTIMITGDNLATAFAVARGVGINKVFAEMDPIEKANQIRSLKSTGNIVAMVGDGVNDSHALAAADVGIAIGAGTNIAIEAADIVLMRSNLEDVVTAIDLSRQTVYRIWLNYIWALGYNIIGMPIAAGILYPFFGIRLPPWLAGACMAASSLSVV 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3550683 3561711 - MELO3C020853.2.1 Cme11g00342 341005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00342 874 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Cme11g00342 874 Gene3D - 36 113 - -
Cme11g00342 874 Gene3D - 332 454 - -
Cme11g00342 874 Pfam E1-E2 ATPase 363 542 - -
Cme11g00342 874 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 317 848 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme11g00342 874 SUPERFAMILY HMA, heavy metal-associated domain 44 115 IPR036163 GO:0046872
Cme11g00342 874 SUPERFAMILY Calcium ATPase, transduction domain A 364 450 IPR008250 -
Cme11g00342 874 SUPERFAMILY Calcium ATPase, transmembrane domain M 312 827 IPR023298 -
Cme11g00342 874 ProSitePatterns E1-E2 ATPases phosphorylation site. 566 572 IPR018303 -
Cme11g00342 874 SFLD Haloacid Dehalogenase 546 823 - -
Cme11g00342 874 PANTHER COPPER-TRANSPORTING ATPASE HMA4 18 874 - -
Cme11g00342 874 Gene3D - 571 649 IPR023299 GO:0000166
Cme11g00342 874 Gene3D - 650 702 IPR023299 GO:0000166
Cme11g00342 874 PRINTS P-type cation-transporting ATPase superfamily signature 771 790 - -
Cme11g00342 874 PRINTS P-type cation-transporting ATPase superfamily signature 564 578 - -
Cme11g00342 874 PRINTS P-type cation-transporting ATPase superfamily signature 718 728 - -
Cme11g00342 874 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
Cme11g00342 874 PRINTS P-type cation-transporting ATPase superfamily signature 696 707 - -
Cme11g00342 874 PRINTS P-type cation-transporting ATPase superfamily signature 794 806 - -
Cme11g00342 874 Pfam haloacid dehalogenase-like hydrolase 560 785 - -
Cme11g00342 874 SUPERFAMILY HAD-like 562 874 IPR036412 -
Cme11g00342 874 SUPERFAMILY HMA, heavy metal-associated domain 132 185 IPR036163 GO:0046872
Cme11g00342 874 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 277 874 IPR027256 GO:0006812|GO:0016021|GO:0019829
Cme11g00342 874 CDD P-type_ATPase_Cu-like 205 874 - -
Cme11g00342 874 Gene3D - 531 827 IPR023214 -
Cme11g00342 874 CDD HMA 48 109 IPR006121 GO:0046872
Cme11g00342 874 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 18 874 - -
Cme11g00342 874 SFLD p-type atpase 546 823 IPR044492 -
Cme11g00342 874 PRINTS Copper-transporting ATPase 1 signature 260 285 - -
Cme11g00342 874 PRINTS Copper-transporting ATPase 1 signature 71 94 - -
Cme11g00342 874 PRINTS Copper-transporting ATPase 1 signature 240 260 - -
Cme11g00342 874 PRINTS Copper-transporting ATPase 1 signature 205 226 - -
Cme11g00342 874 PRINTS Copper-transporting ATPase 1 signature 45 70 - -
Cme11g00342 874 PRINTS Copper-transporting ATPase 1 signature 100 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01752 Cme-Chr9:22014667 Cme11g00342 Cme-Chr11:3550683 0 dispersed
Cme11g00342 Cme-Chr11:3550683 Cme11g00715 Cme-Chr11:8588898 7.18E-47 dispersed
Cme11g00342 Cme-Chr11:3550683 Cme02g01909 Cme-Chr2:25521866 2.41E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00342 K17686 - csv:101214276 1608.96