Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00347 ATGTGGGATCTCAATGATTCTCCTGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGAAGATAGAGGGAAATGGATAGGATCCATCAATTCTAACTCGAGCTCTTCGGTGGTTGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGGAGAACCACTACTTCGGCGGAATAACTTCTCCGTAACTCACCCACCGGCGACTCGGCAGTTCTTTCCCATGGAGGATTCTGACTTGGAGGCTTCATCGGCCGCCGTCGGTGGTTCAACTACGTTTCCTCCAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACAGAGCCTATCGCTGCTGTGAGACCAGTGGCGGTTCTGCAACCAATAAAGAAAAGCCGGCGAGGGCCTAGGTCTCGGAGCTCTCAATATCGCGGCGTCACATTCTACCGGCGAACCGGCCGATGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGTGGATTTGATACTGCTCATGCAGCTGCTCGAGCATACGACAGGGCAGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGCATTGAAGATTACGAGGAGGATTTGCAGCAGATGGGAAACTTAACGAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGTTATCCCAGAGGTAGCTCGAAATTTAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGGCAGTTTTTAGGCAAAAAGTATGTTTATTTGGGGTTGTTCGATTCTGAGATCGAAGCTGCAAGAGCTTATGATAAAGCTGCAATCAAGTGTAATGGGAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAGCCAAAGTCTTGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCCTTTCATTTGGGAATCATTGCACAAATGTCACCCCAAATATTGATTTGCAAATCACTAATGAATCTAACCCTCAGACGGAGAAAATGCAGTTTCGTAGCGAAATGATTGTTCGATCTCCACCCTCCGTCGAAACAACAAAACATGGGTGCTTGGAGACTCTTCACAATTACTCCCCACACATCAATCAATCAAACTCTCAAATTCATTTGTTGAGAAGCAGCAATGAAGAAGGGTTAGGAGGGAGTGATGAAGTTTCACTGAGTTTGAGTGAAAGCCATCAATGGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAAATTTCAACGCCCAAAAATTGGCTGCAGAAGAATAATGGTTGCTTCTTCTTACAGAGACCCTCTTGA 1398 46.21 MWDLNDSPDHGGTDEFEVLSSIDGDEDRGKWIGSINSNSSSSVVVMEDGSDADEASVGEGEPLLRRNNFSVTHPPATRQFFPMEDSDLEASSAAVGGSTTFPPARWVGVKFCQTEPIAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEEDLQQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSAKVLEQNLDLRLGNSSSKKHTLSFGNHCTNVTPNIDLQITNESNPQTEKMQFRSEMIVRSPPSVETTKHGCLETLHNYSPHINQSNSQIHLLRSSNEEGLGGSDEVSLSLSESHQWQQSGGSQQFANAAASSGFPQLQISTPKNWLQKNNGCFFLQRPS 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3595067 3599062 - MELO3C020848.2.1 Cme11g00347 341010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00347 465 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 MobiDBLite consensus disorder prediction 42 69 - -
Cme11g00347 465 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677
Cme11g00347 465 Pfam AP2 domain 233 282 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Cme11g00347 465 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Cme11g00347 465 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 442 - -
Cme11g00347 465 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 442 - -
Cme11g00347 465 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Cme11g00347 465 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
Cme11g00347 465 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00585 Cme11g00347 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00347 Cme-Chr11:3595067 Cme11g01754 Cme-Chr11:25705936 7.69E-11 dispersed
Cme11g00347 Cme-Chr11:3595067 Cme08g00585 Cme-Chr8:3713741 8.91E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42148 PF00847 AP2 1.90E-09 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00347 K09284 - csv:101208665 877.085