Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00348 ATGAAAGACAAAAAGGAAGAGAGAAAATCAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATTCGAGAACCCAATAAACGCTCTCGAATTTGGCTGGGTTCTTATTCCTCCCCCGTGGCTGCCGCCCGTGCTTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCTCGCCTTAATTTCCCTGACTTTTTAACCACCACCGTTGACCGTGGTTCCTTCCCTCTCTCCGCCGCTGCTGTCCGCAAGATCGCTGCCGAAGTCGGCGCTCAGGTCGACGCCCTTGAGTCGTCGTCTCTCCCTCATTCTTCCGTCCAAAGTTGTTGTTCTCTCAACCCCACGAAGCTTCGTTGCTGTTCTTCTTGTTCAAGTGGGTTTTCCGATCGGGTGGACTTGAATAAATTTCCTGACCCGGAAGATTCCGATGGCGACTGCGTTAGTACTCATTGGACAAGCTGA 480 52.29 MKDKKEERKSKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFLTTTVDRGSFPLSAAAVRKIAAEVGAQVDALESSSLPHSSVQSCCSLNPTKLRCCSSCSSGFSDRVDLNKFPDPEDSDGDCVSTHWTS 159
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 3607823 3608478 - MELO3C020847.2.1 Cme11g00348 341011
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00348 159 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Cme11g00348 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 5 149 - -
Cme11g00348 159 Pfam AP2 domain 12 61 IPR001471 GO:0003700|GO:0006355
Cme11g00348 159 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Cme11g00348 159 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Cme11g00348 159 PRINTS Ethylene responsive element binding protein signature 51 71 IPR001471 GO:0003700|GO:0006355
Cme11g00348 159 Gene3D AP2/ERF domain 11 70 IPR036955 GO:0003700|GO:0006355
Cme11g00348 159 ProSiteProfiles AP2/ERF domain profile. 12 69 IPR001471 GO:0003700|GO:0006355
Cme11g00348 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 5 149 - -
Cme11g00348 159 SMART rav1_2 12 75 IPR001471 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cme08g00586 Cme11g00348 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02066 Cme-Chr3:28145674 Cme11g00348 Cme-Chr11:3607823 6.22E-44 dispersed
Cme11g00348 Cme-Chr11:3607823 Cme03g01376 Cme-Chr3:23253482 1.23E-26 dispersed
Cme11g00348 Cme-Chr11:3607823 Cme08g00586 Cme-Chr8:3731857 6.17E-52 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42149 PF00847 AP2 3.10E-11 CL0081 Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00348 K09286 - csv:101209150 283.108