Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g00348 | ATGAAAGACAAAAAGGAAGAGAGAAAATCAAAGCAATTCAAAGGGATAAGGATGAGAAAATGGGGAAAATGGGTTGCCGAAATTCGAGAACCCAATAAACGCTCTCGAATTTGGCTGGGTTCTTATTCCTCCCCCGTGGCTGCCGCCCGTGCTTACGACGCCGCCGTCTTCCACCTCCGTGGCCCCACCGCTCGCCTTAATTTCCCTGACTTTTTAACCACCACCGTTGACCGTGGTTCCTTCCCTCTCTCCGCCGCTGCTGTCCGCAAGATCGCTGCCGAAGTCGGCGCTCAGGTCGACGCCCTTGAGTCGTCGTCTCTCCCTCATTCTTCCGTCCAAAGTTGTTGTTCTCTCAACCCCACGAAGCTTCGTTGCTGTTCTTCTTGTTCAAGTGGGTTTTCCGATCGGGTGGACTTGAATAAATTTCCTGACCCGGAAGATTCCGATGGCGACTGCGTTAGTACTCATTGGACAAGCTGA | 480 | 52.29 | MKDKKEERKSKQFKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDAAVFHLRGPTARLNFPDFLTTTVDRGSFPLSAAAVRKIAAEVGAQVDALESSSLPHSSVQSCCSLNPTKLRCCSSCSSGFSDRVDLNKFPDPEDSDGDCVSTHWTS | 159 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3607823 | 3608478 | - | MELO3C020847.2.1 | Cme11g00348 | 341011 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g00348 | 159 | CDD | AP2 | 11 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme11g00348 | 159 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 | 5 | 149 | - | - | |
| Cme11g00348 | 159 | Pfam | AP2 domain | 12 | 61 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme11g00348 | 159 | SUPERFAMILY | DNA-binding domain | 12 | 70 | IPR016177 | GO:0003677 | |
| Cme11g00348 | 159 | PRINTS | Ethylene responsive element binding protein signature | 13 | 24 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme11g00348 | 159 | PRINTS | Ethylene responsive element binding protein signature | 51 | 71 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme11g00348 | 159 | Gene3D | AP2/ERF domain | 11 | 70 | IPR036955 | GO:0003700|GO:0006355 | |
| Cme11g00348 | 159 | ProSiteProfiles | AP2/ERF domain profile. | 12 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
| Cme11g00348 | 159 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED | 5 | 149 | - | - | |
| Cme11g00348 | 159 | SMART | rav1_2 | 12 | 75 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme08g00586 | Cme11g00348 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02066 | Cme-Chr3:28145674 | Cme11g00348 | Cme-Chr11:3607823 | 6.22E-44 | dispersed | |
| Cme11g00348 | Cme-Chr11:3607823 | Cme03g01376 | Cme-Chr3:23253482 | 1.23E-26 | dispersed | |
| Cme11g00348 | Cme-Chr11:3607823 | Cme08g00586 | Cme-Chr8:3731857 | 6.17E-52 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42149 | PF00847 | AP2 | 3.10E-11 | CL0081 | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g00348 | K09286 | - | csv:101209150 | 283.108 |