Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00355 ATGAAATTAGCTCATCGTCGTTTGAGTTTCTTCTTCATTTCGTTTCTTCCTTTATTCTTTACATTCTTTACTGCCACAGCTTTAACGTTTGATTCCTACATTTCCTACCGGAGAATTCTGCATCAGCCGCTTTTTCCTATTGGCTCTGAGCCACCGCCGGAGATTGAATTCTCTCCACCTCCACCACCTCCACCGGATTCTCCCGCCGATGATCAACCATTTTTCCATGAGCTACCGACGAGTCCAGATCAGAGTCAACCGCCTCCTTCCTCCAGTAATGGAACTATGCCTATACCGGCTGCTACGGCGCAGCCGTCTAAGCCTACCAAGACTGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTTTCGGCTCTTGCGTTCTTTTTGTATCGTCATCGTGCGAAGCATCCTGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATAATCCGGAGAGATTTATGGAGGATTCGAGAGCGCCTCCTTCGAGTTTTTTTTATATTGGAACTGTTGAGCCGAGTCAGAGCTCTGTTGTGGAGCAGAATGGTGCTAATGGTGCGAATAGTTCGCCTTATCGGAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCGGAGTTGCAGCCACTACCGCCTTTGCCTAAACCGCCGGTGGTTATGTCGCCTCCGGCTTTGTCATCTTCTGATGAGGAGAGTCTGGATACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCATGAGGATGGCTATTTTTCACCGGCTTCTCGTCGGAGTAATTCGGTTAAGAGCTGTTCAACGGCGACTTATAAGAATGACCATATCAATTCCAATCCCCCTCCTCCCATCCCGCATTCCAAAAGAACCTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGTAATTCGTCTCAGCCTCAGCCACCGCCACCGCCGCCTCCTCCACCGCGTTCGTTTGATGATATTCGTGCTACTCCGAATTCGAAAGAAACAATGCCCTTCTCTGCCACGAGACCTAGATTTTCGAAGCCTCCTCCCCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAGCTACATTTCCTCAAGTTCCGCAACCTGCTGGAGCTCCACCTCCGCCTCCCCCTCCGCCGCCTCCTCCCCCACCTCCACCTCCACGGCCGACGGCGCATCCGGCCTCTTATTCAACACCACAAAAACTAGGGTTATCAGAAAACAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAATCACAATCCTACTCAACAGCGAGATCAAACTCATCTCCGAAATCCACACCGAGTTCTACGGCAACAAATTCTGCTAAAGAAGACGCTGTCCTAAGCACTAATTCTATGGAGAGGCTGGAAGCAGAAGATGCAGATGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACATCAGACCGAGCTACAGTCTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGATATGATGGAGACACTTTTCGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAAGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAACAGGGTATTAGACCCAAAAAAATCGCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCAAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTTAGAGAGTACTGTGGTGATGCTTCAAAATTAGGGACTGCCGAAAGATTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGAAAATCTTTCCAAACCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTCAAGACAGGAAATAGGATGAATGTTGGTACGAATCGCGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGCACAGATGGAAAAACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTTCGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTCAAAAAAGCAGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAAATGGGGCTCGAAAAAGTAAGGTTGGTCTTACAATTCGAAAAGCCTGGAATGCAGGGAAAATTCTTCAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATCAAGGCTGATGAAAGACAAGCTTTATCGCTCGTGAAAGCAGTGACCGAGTATTTCCATGGCGATGCAGCTAAGGAAGAAGCCCACCCCTTCCGAATCTTCATGATCGTTCGGGATTTCCTAACCATACTCGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGATGGAGTAATGGTGGGTGCTGCTAGATCCTTTCGAATATCCGCTACAGCCTCACTCCCAGTCCTCAGCAGGTATAATGTCAGACACGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 2745 46.89 MKLAHRRLSFFFISFLPLFFTFFTATALTFDSYISYRRILHQPLFPIGSEPPPEIEFSPPPPPPPDSPADDQPFFHELPTSPDQSQPPPSSSNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNNPERFMEDSRAPPSSFFYIGTVEPSQSSVVEQNGANGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVVMSPPALSSSDEESLDTAFHTPQCSSIVSHEDGYFSPASRRSNSVKSCSTATYKNDHINSNPPPPIPHSKRTSPKSRFSVSSTKRNSSQPQPPPPPPPPPRSFDDIRATPNSKETMPFSATRPRFSKPPPPPNLALLQTISNSATFPQVPQPAGAPPPPPPPPPPPPPPPPRPTAHPASYSTPQKLGLSENRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSTATNSAKEDAVLSTNSMERLEAEDADGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALQDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDASKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQTLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRSQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGKFFNSMKTFLKEAEEEIVRIKADERQALSLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3644288 3649162 - MELO3C020840.2.1 Cme11g00355 341018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00355 914 MobiDBLite consensus disorder prediction 183 198 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 87 105 - -
Cme11g00355 914 SUPERFAMILY Formin homology 2 domain (FH2 domain) 384 874 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 142 164 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 402 458 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 50 105 - -
Cme11g00355 914 ProSiteProfiles Formin homology-2 (FH2) domain profile. 468 889 IPR015425 -
Cme11g00355 914 PANTHER FORMIN-RELATED 18 914 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cme11g00355 914 MobiDBLite consensus disorder prediction 50 70 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 296 311 - -
Cme11g00355 914 Gene3D Formin, FH2 domain 462 874 IPR042201 -
Cme11g00355 914 Pfam Formin Homology 2 Domain 472 863 IPR015425 -
Cme11g00355 914 PANTHER FORMIN-LIKE PROTEIN 6 18 914 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 211 227 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 374 401 - -
Cme11g00355 914 Coils Coil 810 830 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 183 474 - -
Cme11g00355 914 MobiDBLite consensus disorder prediction 231 283 - -
Cme11g00355 914 SMART it6_source 468 878 IPR015425 -
Cme11g00355 914 MobiDBLite consensus disorder prediction 312 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00355 - - - cmo:103497354 1538.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00799 Cme-Chr4:9745980 Cme11g00355 Cme-Chr11:3644288 2.62E-121 dispersed
Cme08g00643 Cme-Chr8:4170206 Cme11g00355 Cme-Chr11:3644288 1.00E-25 dispersed
Cme10g00485 Cme-Chr10:3114817 Cme11g00355 Cme-Chr11:3644288 5.93E-95 dispersed
Cme10g01384 Cme-Chr10:16051357 Cme11g00355 Cme-Chr11:3644288 5.09E-173 dispersed
Cme11g00355 Cme-Chr11:3644288 Cme12g01971 Cme-Chr12:25543931 1.35E-27 dispersed
Cme11g00755 Cme-Chr11:9402842 Cme11g00355 Cme-Chr11:3644288 5.24E-21 dispersed
Cme11g00355 Cme-Chr11:3644288 Cme02g01069 Cme-Chr2:15699961 3.18E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme10g01384 . 220 696 FH2 protein (formin) Gene Family AT3G25500 65.2 5.9e-161 565.5
Cme11g00355 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.0 4.0e-141 499.6
Cme02g00090 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.7 4.7e-102 369.8
Cme11g00355 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.4 8.9e-126 448.4
Cme04g00799 . 445 591 FH2 protein (formin) Gene Family AT4G15200 65.5 1.2e-46 184.5
Cme11g00755 . 334 599 FH2 protein (formin) Gene Family AT4G15200 54.4 1.3e-38 157.9
Cme04g00799 . 7 953 FH2 protein (formin) Gene Family AT5G54650 50.2 4.1e-171 599.0
Cme11g00355 . 35 913 FH2 protein (formin) Gene Family AT5G67470 56.5 8.1e-228 787.3
Cme10g01384 . 258 678 FH2 protein (formin) Gene Family AT5G67470 62.3 1.4e-126 451.1
Cme02g00090 . 500 895 FH2 protein (formin) Gene Family AT5G67470 50.7 3.0e-105 380.2
Cme10g00485 . 403 890 FH2 protein (formin) Gene Family AT1G59910 52.5 6.8e-129 458.8
Cme11g00355 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 6.9e-90 328.9
Cme04g00799 . 451 864 FH2 protein (formin) Gene Family AT3G05470 51.2 2.0e-106 384.0
Cme11g00355 . 472 870 FH2 protein (formin) Gene Family AT3G05470 51.8 5.9e-106 382.5
Cme04g01449 . 893 1204 FH2 protein (formin) Gene Family AT1G42980 50.5 1.7e-68 256.5
Cme04g01449 . 1 1211 FH2 protein (formin) Gene Family AT1G31810 66.8 0.0e+00 1245.7
Cme07g00118 . 1 428 FH2 protein (formin) Gene Family AT1G31810 52.3 2.3e-132 470.7
Cme02g01861 CCT 1014 1335 FH2 protein (formin) Gene Family AT5G07650 75.2 4.0e-130 462.6
Cme12g01971 CCT 980 1290 FH2 protein (formin) Gene Family AT5G07650 69.5 1.6e-118 424.1
Cme02g01069 . 867 1186 FH2 protein (formin) Gene Family AT5G07650 62.0 1.9e-108 390.6
Cme04g01449 . 877 1208 FH2 protein (formin) Gene Family AT5G07650 58.4 1.2e-105 381.3
Cme02g01861 CCT 941 1328 FH2 protein (formin) Gene Family AT5G07770 69.4 3.8e-141 498.8
Cme12g01971 CCT 903 1290 FH2 protein (formin) Gene Family AT5G07770 62.7 1.8e-127 453.4
Cme02g01069 . 790 1178 FH2 protein (formin) Gene Family AT5G07770 56.7 2.7e-115 412.9
Cme04g01449 . 813 1202 FH2 protein (formin) Gene Family AT5G07770 54.7 2.0e-113 406.8
Cme02g01069 . 797 1187 FH2 protein (formin) Gene Family AT3G32400 68.4 6.6e-147 517.7
Cme02g01861 CCT 941 1335 FH2 protein (formin) Gene Family AT3G32400 65.7 1.3e-142 503.4
Cme04g01449 . 813 1207 FH2 protein (formin) Gene Family AT3G32400 65.7 2.7e-140 495.7
Cme12g01971 CCT 873 1293 FH2 protein (formin) Gene Family AT3G32400 57.6 2.3e-131 466.1
Cme07g00118 . 1 575 FH2 protein (formin) Gene Family AT2G25050 58.6 1.3e-190 664.1
Cme02g01861 CCT 942 1335 FH2 protein (formin) Gene Family AT5G07780 63.3 4.3e-124 441.8
Cme12g01971 CCT 904 1293 FH2 protein (formin) Gene Family AT5G07780 56.9 8.5e-112 401.0
Cme04g01449 . 814 1203 FH2 protein (formin) Gene Family AT5G07780 51.7 3.3e-100 362.5
Cme02g01069 . 797 1178 FH2 protein (formin) Gene Family AT5G07780 53.3 4.4e-100 362.1
Cme02g01861 CCT 1 1344 FH2 protein (formin) Gene Family AT5G07740 51.2 0.0e+00 1154.8
Cme07g00118 . 1 403 FH2 protein (formin) Gene Family AT5G07740 62.6 1.5e-142 505.0
Cme02g01861 CCT 1013 1342 FH2 protein (formin) Gene Family AT5G07760 74.7 1.1e-128 458.0
Cme12g01971 CCT 979 1293 FH2 protein (formin) Gene Family AT5G07760 69.3 1.2e-116 417.9
Cme02g01069 . 866 1186 FH2 protein (formin) Gene Family AT5G07760 64.4 1.1e-109 394.8
Cme04g01449 . 887 1208 FH2 protein (formin) Gene Family AT5G07760 59.4 2.1e-103 374.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00355 Cme_Chr11 FPKM 110.69883 114.683624 91.135277 90.029999 131.413437 119.101341 135.702255 138.279343 143.558655 143.02536