Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00364 ATGATTCTAATTGGGTCTACGACGTTGGGAATTGGAAGTTCCATTTCCTACAAATGTCACTTCTCGAACAGTCTGCGACGTGGGTTTTACAGTAAAGCTCATTCTAAACACCTATGTGTTAATGGAGGAGAGGATGGAAAGAAGAAAAGGGTCGTCGTCGTTGGCTCCGGTTGGGCTGGCCTTGCCGCTGCTAATCACCTCTGCAATCAGGGATTTGATACCACTGTTCTTGAACCAAGCAATAATTTTGGTGGTGCTGATATTCATGGAATTCGTGGTTACTGGCGTCCCTATAAGAATATATTTGGCCTCGTTGATGAGCTTGGTATCGCTCCTTTCACAAACTGGACAGCACCTGCTCATTATTCAGTTGACGGGTTGGAGTTCCCCCAGCTCCCGTTGTTGGATAGGTTAACATCACTTCTTTTGATGGCTGCAGTTATTGACTTCGACAATACGGATACGGCATGGAGAAAATATGACTCAATTACCGCCCGGGAGCTATTCAGGCAGTTTAGCTGTTCAGGAAAGCTCTATAGTAGCATACTCAATCCATTGCTTCAAGTAGGATTATATGCTCCAGCCGAGCAGTGCAGTGCTGCAGCAACCTTGGGAATTTTATACTACACTATACTTGCTCACCAGAATGATTTCAATCTAGTTTGGTGCCGTGGAACTGTTAAAGAAAGGATTTTCCAGCCATGGATGGACTTGCTGGAGAGCAAGGGATGTAAATTTGTTGGGAGGAGAAAACTCACAGACGTAATTGTAGATGATGATACAAACTGTCTATCGGACATTCTTTGTGGCAGAGAAAGATATGAGGCCGATGCAGTTGTATTTGCTGTTGAAATTTCTGTACTCCAAGAACTCATTCCATTATACACAAAAGAGGAGTTCGTCAAGGTTTTAAACTTGAGAAGTGTTGATTTGCTCACTGTTAAGCTTTGGTTTGATAGAAAAGTAAATATTCCAACTGCAAGTAATTCTTGCTCGGCCTTGGATAATTCATTTGGGTGGAGTTTCTTCAACTTAAATGCCATTCAAGATGAATACAAAGATGAATCAGTTACAGTCTTGCAAGCTGACTTTTTTAAAAGGTTAAGGTTACAGTCATCTTTTCCACAAATTAAACAGTATCACGCCAACGAGCTGTTGCCACTAAACGATGAAGTTATAGTTGAAAAGGTCAAATCCTACCTCTCAACATGCATTAAAGACTTCGAGAATGCCATCGTGGTGAAGAAGGAAATTGGAAAGTTTCCAGAATCATTAACTCACTTCTTTCCTGGTTCATACAAATACATGATGCGCGGCTTTACGTCGTTCCCAAATGTGTTCATGGCTGGAGATTGGATCATAAACCGTCACGGATCATGGTCACAGGAGAAATCATATGTGACTGGCCTTGAAGCTGCAAACAGAGTGGTGGATTTTCTTGAAGAAGGAAGTTTTGCTAAAATTGTGCCAGTAGATGAAGAAGAGCCTCATGTGGAGGCTCTTCGTGGTCTCAATAGAAGGATTGATGAGATTAGGTCCCAACTCCCATTCAACGGAAAACATTGCACCCTCACTGTTAGTTTTATCTCCAACTTCTAA 1599 42.03 MILIGSTTLGIGSSISYKCHFSNSLRRGFYSKAHSKHLCVNGGEDGKKKRVVVVGSGWAGLAAANHLCNQGFDTTVLEPSNNFGGADIHGIRGYWRPYKNIFGLVDELGIAPFTNWTAPAHYSVDGLEFPQLPLLDRLTSLLLMAAVIDFDNTDTAWRKYDSITARELFRQFSCSGKLYSSILNPLLQVGLYAPAEQCSAAATLGILYYTILAHQNDFNLVWCRGTVKERIFQPWMDLLESKGCKFVGRRKLTDVIVDDDTNCLSDILCGRERYEADAVVFAVEISVLQELIPLYTKEEFVKVLNLRSVDLLTVKLWFDRKVNIPTASNSCSALDNSFGWSFFNLNAIQDEYKDESVTVLQADFFKRLRLQSSFPQIKQYHANELLPLNDEVIVEKVKSYLSTCIKDFENAIVVKKEIGKFPESLTHFFPGSYKYMMRGFTSFPNVFMAGDWIINRHGSWSQEKSYVTGLEAANRVVDFLEEGSFAKIVPVDEEEPHVEALRGLNRRIDEIRSQLPFNGKHCTLTVSFISNF 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3709270 3713859 - MELO3C020832.2.1 Cme11g00364 341027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00364 532 Pfam Flavin containing amine oxidoreductase 249 476 IPR002937 GO:0016491
Cme11g00364 532 Gene3D - 45 295 IPR036188 -
Cme11g00364 532 SUPERFAMILY FAD/NAD(P)-binding domain 47 480 IPR036188 -
Cme11g00364 532 PANTHER OS04G0560500 PROTEIN 30 498 - -
Cme11g00364 532 Pfam NAD(P)-binding Rossmann-like domain 53 85 - -
Cme11g00364 532 PANTHER PROTOPORPHYRINOGEN OXIDASE 30 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00364 - - - csv:101207523 909.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01948 Cme-Chr7:24643637 Cme11g00364 Cme-Chr11:3709270 1.07E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00364 Cme_Chr11 FPKM 5.099683 4.948829 4.561723 3.606321 5.923565 4.665688 5.994429 1.8356 1.627679 1.497547