Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00367 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCGACATGTACACAAGGGTTCCGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAGTCGGGCAATTTGAGCTTGCACGAGGCCGGGCCATATGGTACTTTTGTTGGTGTATATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTTACTTCAGAGCAACAATCCATGTCAGTGGATGTCATACGGAAGGCATTTCAAGCTACTGAAGAGGGGGTCATTGCTCAAGTTTCGAAACAATGGTCAATGAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTCGGTGTAATTTGTGGAGGAACCCTTTACATTGCCAACCTTGGCGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAAGCGACAGGGGAAGTTTTGTCTGTTCAGTTGTCGGCTGAGCATAATGCATCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACAGATTGTAGTCTTGAAGCATAATGTATGGCGCGTTAAGGGCCTGATACAGGTTTCTCGATCTATTGGTGATGTCTATTTAAAGAGAGCTGAGTTTAACCGAGAGCCTCTTTATGCTAAGTTTCGCCTTCGTGAACCTATCAAAAAGCCCATACTGAGCGCCGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTACAAGAAGCAGCAAAGAAGAGAGAAATGAGATACTCAGATTTGAAGAAGATTGACCGGGGAGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTTTTTCTCGACTCAAACCTTGTGAGCCGAGCTAGCTCTACAAAATGTGCAAGCCTATCAGTGCGAGGGGGTGGAGTTAACTTACGTCCAAACTCATTGGCCCCCTGCACCACACCATCAGACACTGGCATGGCCTGA 1194 46.65 MFSELMNFLRACFRPRSDRHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRFTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSMRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3727600 3731542 - MELO3C020829.2.1 Cme11g00367 341030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00367 397 SMART PP2C_4 39 353 IPR001932 -
Cme11g00367 397 Gene3D - 36 367 IPR036457 -
Cme11g00367 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Cme11g00367 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Cme11g00367 397 SUPERFAMILY PP2C-like 59 356 IPR036457 -
Cme11g00367 397 Pfam Protein phosphatase 2C 79 324 IPR001932 -
Cme11g00367 397 CDD PP2Cc 48 355 IPR001932 -
Cme11g00367 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Cme11g00367 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01240 Cme11g00367 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02578 Cme-Chr4:31839963 Cme11g00367 Cme-Chr11:3727600 0 dispersed
Cme06g02359 Cme-Chr6:30882718 Cme11g00367 Cme-Chr11:3727600 0 dispersed
Cme08g00965 Cme-Chr8:6344338 Cme11g00367 Cme-Chr11:3727600 0 dispersed
Cme10g00833 Cme-Chr10:5527150 Cme11g00367 Cme-Chr11:3727600 0 dispersed
Cme01g00108 Cme-Chr1:745087 Cme11g00367 Cme-Chr11:3727600 1.56E-144 transposed
Cme04g02241 Cme-Chr4:29542684 Cme11g00367 Cme-Chr11:3727600 1.44E-150 transposed
Cme11g02086 Cme-Chr11:28515753 Cme11g00367 Cme-Chr11:3727600 2.99E-158 transposed
Cme01g01240 Cme-Chr1:15763954 Cme11g00367 Cme-Chr11:3727600 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00367 - - csv:101221640 787.719