Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00372 ATGGAAAAAAAAACGAAGAAAAAAAGTCAACAAAATCAGATGCAATGGGCCACTCAACGTAGGTACAGCCCATGTCCTAGCTTGCAGCTAATGGGCCTAAAGCCCATCAGTTTCTTTGGAGTTTCAATGTGTGAAGTCTTTGTTGTTGGAGATGAAGATGGCTGGAATTCTGGCATCAATTTTGCTACTTGGTCTCAATCCCATAATTTCACCAAAGGAGATTTTCTAGTTTTCAATTATGCAAAGAATGTACACAATGTGTATGAAGTTATTGAAGAGACATATAGATCTTGTGAGGCAAAGAATGGAGTATTGGGTGAATATGATAGTGGGAATGATAAAATTGAACTCAAAGAAGGAAGAAATTATTGGTTCATTTGTAATGTGGTTGGGCATTGCTTGGGTGGAATGAGGTTTGGAATTGAGGTTAAACAACAACCCAATTCTTCTACTCATCTTCCACTTAATCCTATTGATCAATCTCCTCCTCCCAACACCAACCATGCTTCTATTTGTTGTGGAAGGTATCCTATGTGGTGGACCTTTTTCATCTGCATTCTTCTTTTAATGTTCTGA 576 38.02 MEKKTKKKSQQNQMQWATQRRYSPCPSLQLMGLKPISFFGVSMCEVFVVGDEDGWNSGINFATWSQSHNFTKGDFLVFNYAKNVHNVYEVIEETYRSCEAKNGVLGEYDSGNDKIELKEGRNYWFICNVVGHCLGGMRFGIEVKQQPNSSTHLPLNPIDQSPPPNTNHASICCGRYPMWWTFFICILLLMF 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3770170 3774396 + MELO3C034703.2.1 Cme11g00372 341035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00372 191 CDD Phytocyanin 46 143 - -
Cme11g00372 191 Gene3D - 43 149 IPR008972 -
Cme11g00372 191 Pfam Plastocyanin-like domain 55 137 IPR003245 GO:0009055
Cme11g00372 191 PANTHER BLUE COPPER BINDING PROTEIN-LIKE 41 160 - -
Cme11g00372 191 ProSiteProfiles Phytocyanin domain profile. 45 145 IPR003245 GO:0009055
Cme11g00372 191 PANTHER BLUE COPPER PROTEIN 41 160 IPR039391 GO:0009055
Cme11g00372 191 SUPERFAMILY Cupredoxins 45 143 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00372 - - - csv:101221400 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00372 Cme-Chr11:3770170 Cme11g00759 Cme-Chr11:9434380 1.03E-22 dispersed
Cme11g00372 Cme-Chr11:3770170 Cme04g00259 Cme-Chr4:2051335 1.56E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013153 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00372 Cme_Chr11 FPKM 0.463909 0.484597 1.127803 1.160792 1.626624 0.769364 1.530551 1.172454 0.882858 0.946179