Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00380 ATGACGGTTGATCAGGAGGATTCTGAAGCTATTGAAGAGGAAAAGAAGACGAAAAAGACGAGGAAAAATGTGTTAGTGGGGATTAGGATGAATGGGGATAGCAGAGACCTGCTCAATTGGTCGATTGTTAAAGTTGCTGATCCTGGGGATTGTGTCATTGTAATCTATGTTTGTCAAAGTTCTGACCGTGCATCAAAAGATAAGCCCTTATTTGATGAATTCTTAGAAGGATACAGAAACCTTTGTGATGTAAACAAGGTAGCTTTCATTGCACAAATAGTGACTGGAAGTTCGGTTAAGAAGACTCTGGTCAGACAGGCAAAAATCTATGCTGCTGGGGCTGTGGTTTTGGGAACAAGCAAACCATGTAATCTTGGGGGTTGGTCTTCAATAACCAGATATTTTGTTAAGCGTCTGCCTCCAACCACTGATGTTTTGGCTCTCAACAATGGCAAAATTGTCTTCAGAAGATCCACCAATGATCAACTAACAGGCTTGAGTCTAGACCCAAAACCAAGTTTTAGTCAGGCTAGTCAATCCGACTTTGATGGCTCTGAGACTGAGAAATCTGTTTCTTATGGGGTTGGTAGTGAAGACTTGAAGGATGAAGTTGATGGAGTTGTCCTAGAAAGTAAAAGAAATTGTTCCGAACCAGATTCTCCAATGATGATGGAGCATTCCGAGCCGGGGCTTGGTTGGCCTTTGCTCCGAACAACTCCAAGGATTTCGCAAACCTCATCTGTACATAACATGTCTGTAGTGCAATGGGTGATGAACTTACCTGATCGTTCCCCACATCGAAGTTTAAGCATAAAAGGAAATGATCCATTGAGAAGCGAGATCCCTGTTTTTGTGGATGAGAGAGCTAAAGGCAGTTTATCTTCCTTTTCTGAACCACCAGAAGACTTGAAGGATCTCCTGAAAACTAACTCAACTACTTATAAATGGTTTAGTCCTTATGTGTTGAAAACTTCAACTTCTCATTTCTCTTCAGAAAACTTGATTGGGAAAGGTGGTTGCAATCGTGTTTACAAAGGAATTCTCCCAAATGGAAAGCCAGTAGCCGTTAAAGTAATGAACTCGTCCAAACAGGCATGGAATGAATTTTCTCGGGAAGTTGACATTATGTCCTCATTACGTCACAAAAACATAACTCCTTTTCTCGGTATCTGCATCGTAGACAATAAATTGATCTCTGTTTATGATTTCTTTTCCAAAGGAAGTTTAGAGGCAAATCTGTATGGTAGGAATAAAGAAAAGAACATACTTTCATGGGAGGTAAGATTCAGGTTGGCTATTGGAATTGCGGAAGGGCTAAACTACTTACATGACGAATGTCCCCGACCTGTTGTGCACCGAGATGTTAAGACTTCAAACATTCTGCTCTCTGATGAACTCGAACCCAAGTTATCAGATTTTGGGCTTGCTATATGGGGACCAACAGAATCATCCTTTCAGATTGAAGCTGATGTGGTCGGAACATTTGGATATCTTGCTCCGGAATATTTCATGTATGGAAAAATGAGCAATAAGATTGATGTGTATGCCTTTGGTATAGTTCTACTTGAACTGTTATCGGGAAGGAGAGCAATCAGCGCCGAGACTTCTAAAGAGCAACAAAGCTTGGTTATGTGGGCCAAGCCAATCATAGAGAGTGGCAATGTAAAGGACATAGTTGATCCAAATTTGGAGGGAAGATTTGACAAGGAACAGTTGCAAAGAATGGTTCTTGCAGCAACCCTTTGCATCATGAGGGCATCTCGACTCCGTCCTAGAATTAGTCAGATATTGAAGATTCTAAGAGGAGAAAGTGATACTGAAACCCTCCCTGTGGAGGATTCACAAAGTGTAGAGAATGGAGATGATGAAGTTTATCCAAATTCAAGTTCTGAACTGCATTTAAACCTTGCATTGCTTGATGTCGATGATGATGGTGGAGACTCATTTAACAGTGTGGAACAAACAAAAAGGCTTTCATTGGAAAAATATTTCAAAGAAAGATGGAGCAGATCCTCAAGCTTCGACTAG 2028 40.93 MTVDQEDSEAIEEEKKTKKTRKNVLVGIRMNGDSRDLLNWSIVKVADPGDCVIVIYVCQSSDRASKDKPLFDEFLEGYRNLCDVNKVAFIAQIVTGSSVKKTLVRQAKIYAAGAVVLGTSKPCNLGGWSSITRYFVKRLPPTTDVLALNNGKIVFRRSTNDQLTGLSLDPKPSFSQASQSDFDGSETEKSVSYGVGSEDLKDEVDGVVLESKRNCSEPDSPMMMEHSEPGLGWPLLRTTPRISQTSSVHNMSVVQWVMNLPDRSPHRSLSIKGNDPLRSEIPVFVDERAKGSLSSFSEPPEDLKDLLKTNSTTYKWFSPYVLKTSTSHFSSENLIGKGGCNRVYKGILPNGKPVAVKVMNSSKQAWNEFSREVDIMSSLRHKNITPFLGICIVDNKLISVYDFFSKGSLEANLYGRNKEKNILSWEVRFRLAIGIAEGLNYLHDECPRPVVHRDVKTSNILLSDELEPKLSDFGLAIWGPTESSFQIEADVVGTFGYLAPEYFMYGKMSNKIDVYAFGIVLLELLSGRRAISAETSKEQQSLVMWAKPIIESGNVKDIVDPNLEGRFDKEQLQRMVLAATLCIMRASRLRPRISQILKILRGESDTETLPVEDSQSVENGDDEVYPNSSSELHLNLALLDVDDDGGDSFNSVEQTKRLSLEKYFKERWSRSSSFD 675
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3826598 3830055 - MELO3C020817.2.1 Cme11g00380 341043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00380 675 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 140 - -
Cme11g00380 675 MobiDBLite consensus disorder prediction 609 628 - -
Cme11g00380 675 ProSiteProfiles Protein kinase domain profile. 329 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00380 675 Gene3D Transferase(Phosphotransferase) domain 1 404 616 - -
Cme11g00380 675 MobiDBLite consensus disorder prediction 608 628 - -
Cme11g00380 675 SMART serkin_6 329 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00380 675 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 20 649 - -
Cme11g00380 675 MobiDBLite consensus disorder prediction 166 196 - -
Cme11g00380 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Cme11g00380 675 Gene3D Phosphorylase Kinase; domain 1 300 403 - -
Cme11g00380 675 CDD USP_Like 23 146 - -
Cme11g00380 675 Pfam Protein kinase domain 330 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g00380 675 MobiDBLite consensus disorder prediction 166 192 - -
Cme11g00380 675 Gene3D HUPs 3 146 IPR014729 -
Cme11g00380 675 PANTHER OS08G0249100 PROTEIN 20 649 - -
Cme11g00380 675 SUPERFAMILY Protein kinase-like (PK-like) 310 600 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00380 - - - csv:101206547 1224.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01200 Cme-Chr1:15214978 Cme11g00380 Cme-Chr11:3826598 1.12E-65 dispersed
Cme08g00480 Cme-Chr8:2981849 Cme11g00380 Cme-Chr11:3826598 1.69E-13 dispersed
Cme11g00032 Cme-Chr11:332278 Cme11g00380 Cme-Chr11:3826598 4.32E-125 dispersed
Cme11g00380 Cme-Chr11:3826598 Cme02g00224 Cme-Chr2:1798667 5.16E-78 dispersed
Cme11g00380 Cme-Chr11:3826598 Cme04g01192 Cme-Chr4:16312530 7.02E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g160 . Blo15g00380 Bda06g00477 Bda08g00992 Bpe07g00715 . Bma05g00367 Bma12g00919 . . Cma02g00258 Cma20g00752 . Car20g00653 . . . . . . . . . . . . . . . . . . . . . Lsi10g00758 . Chy11g00254 . . . . . . Bpe05g00289 . . . Cmo02g00255 Cmo20g00747 . . . . Cpe16g00317 Cpe05g01372 Bhi10g01849 . . . . . . Cla02g01167 . . . . . . . Csa02g01393 . Cme11g00380
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005074 2 4 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 0 2 1 1 1 1 1 1 1 1 0 1 2 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65228 PF00069 Pkinase 1.20E-41 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00380 Cme_Chr11 FPKM 38.843304 48.049522 50.715969 54.096329 70.714745 68.707718 75.780037 88.64669 91.762558 97.388657