Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g00381 | ATGAGTGTTTCGAGGTTTATTAAGTGTGTTACGGTTGGTGATGGTGCTGTTGGGAAAACTTGTATGCTTATCTCCTACACCAGCAACACTTTTCCCACGGATTATGTGCCAACTGTTTTCGACAATTTTAGCGCGAACGTAGTTGTGGATGGCAGTACAGTCAACCTAGGCTTGTGGGATACTGCTGGTCAGGAAGATTACAATAGACTGCGACCTTTGAGCTATCGTGGAGCAGATGTATTTTTGTTAGCATTCTCTCTCATAAGCAGGGCTAGCTACGAAAATGTGGCCAAAAAATGGATTCCTGAATTAAGGCATTATGCTCCTGGTGTACCGGTTATTCTCGTCGGGACTAAGCTTGATCTTCGAGAAGATAAACAGTACCTGAACGAACACCCAGGGATCGTGCCAATTACCACTGCCCAGGGAGAGGAACTAAGAAAACTCATCGGTGCCCCAGTTTACATCGAATGCAGTTCGAAAACACAGCAAAATGTGAAGGCAGTTTTCGACGCAGCAATCAAAGTGGTTCTTCAACCTCCAAAGCGGAAGAAGCGAAAGAAGCGAAAGGCACAGAAGGCTTGTTCTATATTATGA | 597 | 44.89 | MSVSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVAKKWIPELRHYAPGVPVILVGTKLDLREDKQYLNEHPGIVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKRKKRKKRKAQKACSIL | 198 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3835039 | 3838411 | - | MELO3C020816.2.1 | Cme11g00381 | 341044 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g00381 | 198 | CDD | Rop_like | 6 | 178 | - | - | |
| Cme11g00381 | 198 | ProSiteProfiles | small GTPase Rab1 family profile. | 2 | 198 | - | - | |
| Cme11g00381 | 198 | Gene3D | - | 2 | 198 | IPR027417 | - | |
| Cme11g00381 | 198 | ProSiteProfiles | small GTPase Rho family profile. | 1 | 177 | - | - | |
| Cme11g00381 | 198 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 6 | 178 | IPR027417 | - | |
| Cme11g00381 | 198 | PRINTS | Transforming protein P21 ras signature | 7 | 28 | - | - | |
| Cme11g00381 | 198 | PRINTS | Transforming protein P21 ras signature | 30 | 46 | - | - | |
| Cme11g00381 | 198 | PRINTS | Transforming protein P21 ras signature | 47 | 69 | - | - | |
| Cme11g00381 | 198 | PRINTS | Transforming protein P21 ras signature | 109 | 122 | - | - | |
| Cme11g00381 | 198 | PRINTS | Transforming protein P21 ras signature | 155 | 177 | - | - | |
| Cme11g00381 | 198 | SMART | ras_sub_4 | 4 | 180 | - | - | |
| Cme11g00381 | 198 | TIGRFAM | small_GTP: small GTP-binding protein domain | 7 | 171 | IPR005225 | GO:0005525 | |
| Cme11g00381 | 198 | PANTHER | RAC-LIKE GTP-BINDING PROTEIN 5 | 1 | 198 | - | - | |
| Cme11g00381 | 198 | PANTHER | RHO FAMILY GTPASE | 1 | 198 | IPR003578 | GO:0005525|GO:0007264 | |
| Cme11g00381 | 198 | Pfam | Ras family | 8 | 178 | IPR001806 | GO:0003924|GO:0005525 | |
| Cme11g00381 | 198 | SMART | rab_sub_5 | 7 | 180 | - | - | |
| Cme11g00381 | 198 | SMART | rho_sub_3 | 9 | 180 | IPR001806 | GO:0003924|GO:0005525 | |
| Cme11g00381 | 198 | ProSiteProfiles | small GTPase Ras family profile. | 2 | 198 | IPR001806 | GO:0003924|GO:0005525 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g00381 | K04392 | RAC1; Ras-related C3 botulinum toxin substrate 1 | - | csv:101219263 | 371.703 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme05g01985 | Cme-Chr5:28367958 | Cme11g00381 | Cme-Chr11:3835039 | 2.58E-107 | dispersed | |
| Cme06g02369 | Cme-Chr6:30948794 | Cme11g00381 | Cme-Chr11:3835039 | 9.04E-122 | dispersed | |
| Cme08g00255 | Cme-Chr8:1655261 | Cme11g00381 | Cme-Chr11:3835039 | 4.70E-111 | dispersed | |
| Cme11g00381 | Cme-Chr11:3835039 | Cme10g00895 | Cme-Chr10:6361290 | 7.16E-26 | dispersed | |
| Cme11g00381 | Cme-Chr11:3835039 | Cme11g00857 | Cme-Chr11:11279814 | 2.38E-123 | transposed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g158 | . | . | . | . | . | . | Bma05g00366 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Lsi10g00494 | . | Chy11g00256 | . | . | . | . | . | . | Bpe05g00288 | . | . | Sed01g0196 | Cmo02g00254 | . | . | . | . | . | . | Cpe05g01373 | Bhi10g01852 | Tan05g1137 | Cmetu11g1470 | . | Hepe08g0292 | . | . | Cla02g01166 | Cam02g1244 | Cec02g1253 | Cco02g1294 | Clacu02g1226 | Cmu02g1193 | Cre02g1505 | . | Csa02g01391 | . | Cme11g00381 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000081 | 8 | 10 | 6 | 8 | 9 | 9 | 12 | 9 | 9 | 8 | 7 | 9 | 10 | 9 | 9 | 11 | 9 | 16 | 12 | 7 | 8 | 8 | 9 | 9 | 4 | 5 | 6 | 16 | 12 | 8 | 272 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cme11g00381 | Cme_Chr11 | FPKM | 13.776836 | 15.501823 | 10.337515 | 11.273976 | 18.273624 | 18.129875 | 17.080248 | 9.086112 | 10.066698 | 9.503423 |