Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00382 ATGGGCACTGAAGAAGACGATCTCGATCTTCTCCTTTCTCTCCAAGATAAAGTCGTTGAAACTCCTCCTGGGACTCCGCCTCATACCTCAGATCTTCTATCTGACGATGAATCACCAAGACGAGCAGGTCCGGCGGATATGTCTATCTTCAGAAACGCTGTCAAAGACTGCCTTGATTATGACCACATACGGACTGAAAAAAATGCTAAAACGAACCGGTCTAAGGCGTCTAATGATATTTCAATCGAGAAGTTTTCTGGTTTGCGAATGAGGAATCAAGTTGTAGCACCTGCAGAGCTTCACGATCGTTTTTCTGATATTCGCTTTGTTCGTTTGTCAACCATAAAATTCACAGATTTGCTGACCCTCCATTTGATCCGTTCTGTTCAAATCCGTAGATGCCGTACACTGTACCTGACGCAGAAGGCGATGGAGATTCGTTCTGCTCCAACGACGATGAGGCTCTTCAAATCCGACGACTTGCTCTGGTTCCGGAATCTGTTGATTGGGGACACCCTTTCAGGGTGTTGGGTGACTGTCGGAGTGTTGACTGAGAAAGGAAGTCAAAGGACAAGCTCTACTGGGAAAGCTTACTGCATCTGGAAACTTAGTTGTTTGGATGAACAAACCGTTTCTGTGTTCTTATTTGGTGATGCTTATCAAAGAAATTGCAAGGAGCTGGCTGGAACAGTTTTTGCCCTTTTTAACTCTACAGTACGAAAGGATGCAACGGGCATGGGATTTTCTTTAAGTGTTTATCAACCAAACCAGTTGTTATTGATGGGCACTTCAGATGACTATGGAGTATGCAAGGGGAAGAAGGATGGGATTGCTTGTACAACAGTAATAAATAGGCGACGTGGCATATACTGTAAATACCATAAATCAAAGGCATCAGAAAAATATTCCACAACCACACGAACTGAGCTCAAAGGAGGTAATCTGAGGACTGCATTCAGAGATTATCATCATAAGCCAGAGGGAGTTTACATGGTAGATCCGCGAGCTGGTAAAGTGACTTCTAAAAGGCCAACACAGCCGGTAAAACTGTTGTCTGTGGAAAGCCTGAAAAGGGCATTGAGCAATGCAGATAAAGTTACCACCAACGCACACTCACAAGGGAAAAGATTCCTCGCTGAGATAACAGGGAAATTGTATAGCGAAAGTGTAAATAAAGAACCAACCAAAAGAAGTCAGCAGAGAATCAGTTCAGAAAAGACATCAATTTTGAAGTCGAGAGTTGAAAACCAACAACCAGATCCAAAAAGAAAGAAAACTGACCATACTCCGGCAAACAAAACCACTAAAGATATCGGAAAGATGATAGAGTTAGATTATGTTAGTTCAGAAGATGAGGATGATATCGACCTTATATTCAGCAGATAA 1386 42.64 MGTEEDDLDLLLSLQDKVVETPPGTPPHTSDLLSDDESPRRAGPADMSIFRNAVKDCLDYDHIRTEKNAKTNRSKASNDISIEKFSGLRMRNQVVAPAELHDRFSDIRFVRLSTIKFTDLLTLHLIRSVQIRRCRTLYLTQKAMEIRSAPTTMRLFKSDDLLWFRNLLIGDTLSGCWVTVGVLTEKGSQRTSSTGKAYCIWKLSCLDEQTVSVFLFGDAYQRNCKELAGTVFALFNSTVRKDATGMGFSLSVYQPNQLLLMGTSDDYGVCKGKKDGIACTTVINRRRGIYCKYHKSKASEKYSTTTRTELKGGNLRTAFRDYHHKPEGVYMVDPRAGKVTSKRPTQPVKLLSVESLKRALSNADKVTTNAHSQGKRFLAEITGKLYSESVNKEPTKRSQQRISSEKTSILKSRVENQQPDPKRKKTDHTPANKTTKDIGKMIELDYVSSEDEDDIDLIFSR 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3842891 3854310 - MELO3C020815.2.1 Cme11g00382 341045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00382 461 MobiDBLite consensus disorder prediction 18 44 - -
Cme11g00382 461 PANTHER PROTEIN MCM10 HOMOLOG 44 429 IPR040184 GO:0003690|GO:0003697|GO:0006270
Cme11g00382 461 MobiDBLite consensus disorder prediction 390 438 - -
Cme11g00382 461 MobiDBLite consensus disorder prediction 401 415 - -
Cme11g00382 461 MobiDBLite consensus disorder prediction 416 438 - -
Cme11g00382 461 Pfam Primase zinc finger 262 303 IPR015408 GO:0005634|GO:0006260
Cme11g00382 461 Gene3D - 73 295 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00382 K10736 MCM10; minichromosome maintenance protein 10 - csv:101219022 746.888
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g157 . . . Bda08g00993 . . Bma05g00365 . . . . Cma20g00753 . Car20g00654 . . . . . . . . . . . . . . . . . . . . . Lsi10g00493 . Chy11g00257 . . . . . . Bpe05g00287 . . Sed05g3488 . Cmo20g00749 . . . . Cpe16g00316 . Bhi10g01853 Tan05g1140 Cmetu11g2130 . Hepe08g0291 . . . . . . . . . . Csa02g01390 . Cme11g00382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014140 1 1 0 1 1 0 1 0 0 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 2 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00382 Cme_Chr11 FPKM 17.041166 21.012053 24.422026 19.864737 47.177597 43.413654 42.259247 15.636659 16.815296 14.989166