Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00383 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACTCGTTCTACCAAGCGCGCTCGTCTTTCTGCTACTTCTTCGTCGAATCTTGCTGCTGCATCTACTCTTTCGATCTCTACACGTTCTCGCTCTACCCGAACCCAAGAACCGTCTGCCACTACTACTCCAATGGACTCGACTAATGAATCATCTGGGTCACGCCGACGTGGGAAGAATTCTGATAAAGAGAACTCGGATAAGGGGAAGGAGAAGGAACATGAGGTTAGGATTGGGGATAGAGAAAGAAATGCTGACCAGAGCTTTGGGTTGAATATTGAAGGGAGTGGCGGTGGGGAGGATGATGATAATGATAGTGAAGGAGGAATGGGAGTCTTGCAGCATAATTTGTCCACTGCTAGTAGTGCCCTTCAGGGGCTTCTCAGGAAACTCGGTGCTGGATTGGATGATTTACTTCCATCTTCTGCTATTGCATCGGCTTCATCCTCACAGCAGAGAGGACGGCTTAAGAAAATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGGAAGCAGGTTGAGGCATTGACACAACTCTGTGAGATGCTTTCAATCGGGACTGAGGAGTCTCTAAGTACTTTCTCTGTTGATTCTTTTGTCCCTGTCCTTGTTGGGTTGCTTAATCACGAAAGCAATCCTGATATAATGCTTCTAGCGGCTAGGGCACTAACCCATCTGTGTGATGTTCTCCCTTCATCATGCGCTGCGGTTGTGCACTATGGTGCTGTTCCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCTGATATGATGGTACTAATAGAAGTAGGTTTCTGTCAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCTTGCCTGCGGGCTGGTGCTCTCATGGCTGTGCTTTCATATTTAGATTTCTTCTCTACAGGAGTTCAGCGAGTTGCACTGTCCACTGCTGCGAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTTCCTCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAAGTTTCTGTAGTAGATGAAACTTTCTTTGCCTTCAATTGGAGACCAATGAGACGGTGTCTTAGAACAAAAAGAGAGACAGGCTCTCCTGACTCCTCCTGGAGGTTTTTGAAGGTCTTTTTGGTCGCTCAGGCTTGGCGCCCCCCCTCCCCCCTTAAAAGATTAACAATTAAGGTGTTGGAGCACGCTTCAGTTTGTTTGACTCGTATTGCGGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAACCATGGACTTGTTACGCAAGCCGCCTCACTTATTTCCACCAGCAGTACTGGAGGTGGACAGTCAACTCTTGGATCAGCTACTTACACTGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTGGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGCATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAACGCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCTCCTCTACCTCAAGGAACTATTTCCTTTCCACCCAACTTTAATATGTTTGTGAAAGGACCAGTCATCAAGAAGCCATCTACAAGCGGTTCTGTGAAAGAAGAAGATCCAACTGATAGTGCTCCAGAAGTGTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCTGAGCTCCTCCTCCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGTTCCAGTGTGAATGGTCCAGTACGTCATAAATGCCTCTCTGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACATATTTTGATTCCTGCTCTGCAAATTGCTGAGATTCTTATGGAAAAGCTTCACGAAACATTTTCTAAGATGTTCCTTCGGGAGGGCGTTGTTTATGCTGTTGACCAGCTTATCTTGGCTAATAACCAAAATACTTCTTCCCAAGCGGCTTCTGTGGAGAAGGATAGCACCTCTGCATCTGGAACTTCATCACGCACTCGACGTTATAGGCGGCGTAGTGGAACTATGAACTCGGATGGAAGTTCACTGGACGAAAACAAGAATTCTGTTTCTGGAAGTGGTGTTCCACAGGGTTCGGTGGAGGTTCCATCAATTAATTCTAATCTCCGATCTTCTGTAAGTTCCTGTGCCAACGCATTTAAAACTAAGTATTTCCCCTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTCTGAAGAATCTTTGTTTCAAGTTGAATGCTGGTATTGATGATCAGAAGAGTAAATCGAAAGGAAAGTTGAAAGCGTCAGGGTCCCGCTTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTGGGCAAAGATGATGGTGTTTCCACCTTTGAATTTATTGGTAGTGGTGTTGTTGGAGTTCTGCTTAACTACTTTTCTTGCGGATACTTTTCTAAAGGAAGAATTTTGGATGTTGAGTTGCCAAAGCTTCGGCAACAAGTGCTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTGCTAGAATTAATGAAGGAACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTGCAGAGTGCTTTATCGTCGCTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCTTCCAGTGGTAGTGCCCGGCTTTCCTCTGGGCTTAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCTCAGGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTTTGATTGATCCTTTGGCAAGTTTAGCAGCTGTTGAAGAGTTTCTGTGGCCTAGAGTTCAGAAAAGTGAATCTGGTCAGAAACCTTCAGCATCTGGTGCAAACTCAGATTCAGGAACTACGCCTTCAGGAAATGTTGCTCCATCAGGGTTAAATTCAACCCCGAGTTCAACTGCTCGTCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACATCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGGGGCCTGCAAACTAGAAGTTCTACTCGTAGGAGAGCAGCTGTGGACAAGGATGCCCAAATGAAGCCTGTAAATGGAGAGACTACATCTGAGGATGAAGAATTGGACCTATCCTCTATCCAGATTGATGATTCTTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGACGATGATCACGATGATGTGCTGCAGGATGACTCTCTTCCTCTTTGTATGCCTGAAAAGGTGCATGATGTCAAATTGAGCGATACAGTTGAAGATGGGGATGCTGGTCCAGCTACAAGTGATGGTCAGATTCATTCAACTTTTGGCTCTAGCAGCAGAGCTGCTACAGTCAGGGGTTCTAGTTCTCCTGATCATAGGAGTGGAAATTCTTTTAGTTCGAGGGGAGGTATGTCCTTTGCTGCTGCTGCTATGGCTGGGCTCGGACCAGCTAATGGCAGAGGTTTCCGTGGAGGTCGGGATCCACAGGGACGGCCTCTTTTTGGTGGCTCCAATGACAACCCAAAATTACTTTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGTCAGCTTGTTTTGAATGAAGACGATGATGAGAGGTTTGCTGGTGCTGGAAGCGATTTCTTGTCTAATGATGGGAGCAGTTTATGGGGTGATATATATACTATCACATATCAAAGGGCAGATAATCAATCTGAAAGAGCTGCTTTAGCTGGGGAATCAAGCTCTTCAAAATCTAAATCCACCAAATGTGTATCGGCTTCCAATTCAAATTCAGAGTCTCAATTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTTGACAAGTCTAATCCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCACGCCTAAGGGCACAAATCGTGTCAGATCAATTTGCAGAGGGAAAGATCACTGCGCTTGATGAATTGGGTGGAGTTGGTGGAAAAGTTCCTCATGAGGAATTTATCAACAACAAGCTTACTCCCAAGTTGGCTCGACAAATTCAGGATGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCATGGTGCTACCAATTGACTAAGGCATGTCCGTTCTTATTTCCTTTTGAGACCCGCCGGCAATATTTCTATTCAACTGCATTTGGGTTGTCACGTGCATTGTATCGGCTACATCAGCAGCAAGGAGCTGATGGTATTGGAACAGTAAATGAACGAGAGGGAAGGGTCGGAAGATTGCAGCGCCAGAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCTGCTGCAAAAGTTATGGAAATGTATTCCAGCCAGAAGGCTGTTCTTGAAGTTGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCGACCCTTGAGTTCTACACACTTCTAAGTCATGAACTGCAGAGGGCTGGACTTGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAACAGATAGCGGTGAAGATGGACAAGCTAGGAAGCTTAAAGGTGGCTCTAGGCTTACTTCTGATGCAGCCAATATTGATATCATTCAATCACCTCTTGGGTTGTTTCCTCGACCTTGGCCACCAAATGCTGATTCTTCTGATGGCAGCCAACTTTCAAAGGTTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCCAAAGCTCTGCAAGATGGAAGACTATTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGATGCTGAGCTTGGGAAGACTTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAGCAGTACTTAGAATCGATAAATGGTGATAATCAAAATACAATTTCCAACTTGACTTTCCGTGGGATTCCAGTTGAAGACCTCTGCTTGGATTTTACAGTTCCTGGTTATCCAGACTACGTGTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCGACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCAGGATTCAATCAGGTTTTTGACATCACAGCATTACACATATTCATTCCCCATGAATTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCCGACACACTTGTGGATCATATTAAATTCGATCATGGATACACAGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAAATTATGGGAGAATTCACACCGGAGCAGCAGCGAGCATTCTGCCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCCGTGTTGAACCCAAGATTGACTATTGTGAGAAAGCATTCATCAACTGCAACGAATACAGCAAACAGCGCCACAGGGGCTTCTGAGTCAGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCGTACTCAACCAAGGAATTCGTGGATTCCCTCCACAAGCACCTGGGGTGGTTATTGGCTGATACATGA 5880 44.2 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSATSSSNLAAASTLSISTRSRSTRTQEPSATTTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNADQSFGLNIEGSGGGEDDDNDSEGGMGVLQHNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVPCFCARLLTIEYMDLAEQSDMMVLIEVGFCQQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVSVVDETFFAFNWRPMRRCLRTKRETGSPDSSWRFLKVFLVAQAWRPPSPLKRLTIKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSTGGGQSTLGSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNMFVKGPVIKKPSTSGSVKEEDPTDSAPEVSAREKLLKDQPELLLQFGMDLLPILIQIYGSSVNGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNTSSQAASVEKDSTSASGTSSRTRRYRRRSGTMNSDGSSLDENKNSVSGSGVPQGSVEVPSINSNLRSSVSSCANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCFKLNAGIDDQKSKSKGKLKASGSRLDDIITNKEEYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRILDVELPKLRQQVLKRFKSFISVALPARINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGANSDSGTTPSGNVAPSGLNSTPSSTARRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLSDTVEDGDAGPATSDGQIHSTFGSSSRAATVRGSSSPDHRSGNSFSSRGGMSFAAAAMAGLGPANGRGFRGGRDPQGRPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGSDFLSNDGSSLWGDIYTITYQRADNQSERAALAGESSSSKSKSTKCVSASNSNSESQFHQMSLLDSILQGKLPCDFDKSNPTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITALDELGGVGGKVPHEEFINNKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGIGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESTDSGEDGQARKLKGGSRLTSDAANIDIIQSPLGLFPRPWPPNADSSDGSQLSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKTLQELQALVCRKQYLESINGDNQNTISNLTFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDITALHIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNTANSATGASESADDDLPSVMTCANYLKLPPYSTKEFVDSLHKHLGWLLADT 1959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3855221 3865996 - MELO3C020814.2.1 Cme11g00383 341046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00383 1959 MobiDBLite consensus disorder prediction 10 74 - -
Cme11g00383 1959 ProSiteProfiles HECT domain profile. 1563 1947 IPR000569 GO:0004842
Cme11g00383 1959 SMART hect_3 1550 1957 IPR000569 GO:0004842
Cme11g00383 1959 MobiDBLite consensus disorder prediction 725 741 - -
Cme11g00383 1959 CDD HECTc 1539 1943 IPR000569 GO:0004842
Cme11g00383 1959 MobiDBLite consensus disorder prediction 583 600 - -
Cme11g00383 1959 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 429 1945 IPR045322 GO:0006511|GO:0061630
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1603 1625 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 75 107 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1 135 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 725 780 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1028 1181 - -
Cme11g00383 1959 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 50 375 - -
Cme11g00383 1959 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 429 1945 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 752 780 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1029 1082 - -
Cme11g00383 1959 SUPERFAMILY Hect, E3 ligase catalytic domain 1531 1944 IPR035983 GO:0004842
Cme11g00383 1959 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 50 375 IPR045322 GO:0006511|GO:0061630
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1256 1279 - -
Cme11g00383 1959 Gene3D Hect, E3 ligase catalytic domain 1834 1952 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1083 1126 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1205 1239 - -
Cme11g00383 1959 SUPERFAMILY ARM repeat 178 719 IPR016024 -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 580 600 - -
Cme11g00383 1959 Pfam HECT-domain (ubiquitin-transferase) 1587 1944 IPR000569 GO:0004842
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1347 1371 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1138 1173 - -
Cme11g00383 1959 MobiDBLite consensus disorder prediction 1194 1239 - -
Cme11g00383 1959 Gene3D - 180 732 IPR011989 -
Cme11g00383 1959 Gene3D Hect, E3 ligase catalytic domains 1479 1725 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00383 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 2904.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02560 Cme-Chr4:31719536 Cme11g00383 Cme-Chr11:3855221 3.67E-108 dispersed
Cme11g00383 Cme-Chr11:3855221 Cme11g02100 Cme-Chr11:28635377 2.52E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00383 Cme_Chr11 FPKM 6.269639 7.698828 9.876163 9.29994 18.676075 24.761337 20.232197 5.278137 6.171766 7.04865