Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00384 ATGGGTTTTCTCAACGCCCTTTGGAGCATTTGTGGGTTCTCCCTTGGAATCTCAGCTGGCTTCATCGTTGGATATTTCTTCTTCATATATTTCAAACCAAGTCATGTGAAGGATCCTGAGATTAAGCCGTTGACTGAACCCGACCCCGAAACTATGCAGCGGATGCTCCTTGAGTTGCCGCTTTGGGTGAAGAATCCAGATTATGATCGAATGGATTGGCTAAACTCGTTTATTGACTATTTGTGGCCTTATATTGACAAGGCAATTGCCAAGACAGTAAGAACTGTCATTAAGCCTATAATTGCCGAGGAAATTCCCAAGTATAAGATCCAGTCTGTTGAAATCCAAGAGCTCACGCTTGGGACGCTTTCGCCGACTCTTCAAGGTATGAAAGTGTATGAGATGCATGAAAATGAGTTGATATTGGAACCAGCAATTAAGTGGGCAGGAAATCCCAACATCATGGTTGCAATTAAAGCCTTTGGATTAAAAGCCACTGTTCAGATGGTGGATCTGCAAGTTTTCGCCGTTCCTCGGATCATCTTGAAGCCACTGGTTCCAAGTTTTCCTTGTTTTGCAAACATTTCTGTCTCTCTTATGGAAAAGCCACACATTGATTTTGGACTAAAGCTCATGGGGGTAGACCTTATGTCAATACCCGGTCTTTATACGTTTGTCCAGGAGCAAATAAAAGATCAGATTGCAAGCATGTATCTGTGGCCAAAGACTTTAAAAATACAAATTCTCGACTCTGCCAAGTATGTATTTGGTGCATCAGATCCATATATAAAACTGAAGCTCACCGATGACAAGTTACCTTCGAAGAAGACGTCCGTGAAGCACAATAACTTGAACCCTGAATGGAACGAGGAGTTCAAGTTAATTGTTCGAGATCCTCAATCCCAAGCCTTAGAGCTCCATGTTTATGATTGGGAGAAGATTGGGAAGCATGACAAGATGGGCATAAATGTTGTACCTTTGAAAGATCTTCCTCCTGATGAGGTGAAAGTCTTGACTCTTCCCCTTCTAAAGAAGACTGATTCGGATGGCGTCGAGAACGAGAAGGACCGTGGTCAGGTTGTAGTTGAACTTAAATATAAACCATTTAAAGAGGATGAGATACCGAAAGGTTTTGGGGAAATGCACGCAGTACCAAAAGCTCCCGACGGAACACCAGCCGGTGGCGGTTTGTTGGTGGTCATAATTCATGAAGCTGAAGATGTTGAAGGAAAACATCACACCAATCCATTTGTAAGGATTTACTTCAGGGGTGATAAGAGAAAAACTAAGCGGGTGAAGAAGAATAGAGATCCAAGATGGGAGGAGGAGTTCGCTTTTCCACTAGACGAACCTCCAACAAATGACAAAGTACACATAGAAGTTATCAGCACTTCTTCAAAAATAGGTTTGCTGCATCCAAAGGAATGTCTTGGCTATGTGGACATCAGCCTGTCGGATGTGGTGGCTAACAAAAGGATTAATGAGAAGTACCACCTCATAGACTCAAAGAATGGACGCATCCATGTTGAACTTCAATGGAGAACTTCCTCATAG 1554 42.73 MGFLNALWSICGFSLGISAGFIVGYFFFIYFKPSHVKDPEIKPLTEPDPETMQRMLLELPLWVKNPDYDRMDWLNSFIDYLWPYIDKAIAKTVRTVIKPIIAEEIPKYKIQSVEIQELTLGTLSPTLQGMKVYEMHENELILEPAIKWAGNPNIMVAIKAFGLKATVQMVDLQVFAVPRIILKPLVPSFPCFANISVSLMEKPHIDFGLKLMGVDLMSIPGLYTFVQEQIKDQIASMYLWPKTLKIQILDSAKYVFGASDPYIKLKLTDDKLPSKKTSVKHNNLNPEWNEEFKLIVRDPQSQALELHVYDWEKIGKHDKMGINVVPLKDLPPDEVKVLTLPLLKKTDSDGVENEKDRGQVVVELKYKPFKEDEIPKGFGEMHAVPKAPDGTPAGGGLLVVIIHEAEDVEGKHHTNPFVRIYFRGDKRKTKRVKKNRDPRWEEEFAFPLDEPPTNDKVHIEVISTSSKIGLLHPKECLGYVDISLSDVVANKRINEKYHLIDSKNGRIHVELQWRTSS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3874081 3879361 + MELO3C020813.2.1 Cme11g00384 341047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00384 517 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 253 IPR045050 GO:0008289
Cme11g00384 517 CDD C2 244 342 - -
Cme11g00384 517 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Cme11g00384 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 396 515 IPR035892 -
Cme11g00384 517 SMART C2_3c 397 496 IPR000008 -
Cme11g00384 517 SMART C2_3c 243 339 IPR000008 -
Cme11g00384 517 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 245 IPR039010 -
Cme11g00384 517 ProSiteProfiles C2 domain profile. 377 497 IPR000008 -
Cme11g00384 517 Gene3D C2 domain 397 516 IPR035892 -
Cme11g00384 517 Pfam C2 domain 253 339 IPR000008 -
Cme11g00384 517 Pfam C2 domain 397 499 IPR000008 -
Cme11g00384 517 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 253 515 - -
Cme11g00384 517 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 253 - -
Cme11g00384 517 Gene3D C2 domain 244 378 IPR035892 -
Cme11g00384 517 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 370 IPR035892 -
Cme11g00384 517 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 253 515 IPR045050 GO:0008289
Cme11g00384 517 ProSiteProfiles C2 domain profile. 228 340 IPR000008 -
Cme11g00384 517 PRINTS C2 domain signature 282 295 IPR000008 -
Cme11g00384 517 PRINTS C2 domain signature 304 312 IPR000008 -
Cme11g00384 517 PRINTS C2 domain signature 255 267 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00384 - - - csv:101218559 985.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01268 Cme11g00384 CCT
Cme01g01268 Cme11g00384 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01869 Cme-Chr3:26921041 Cme11g00384 Cme-Chr11:3874081 0 dispersed
Cme10g00079 Cme-Chr10:596234 Cme11g00384 Cme-Chr11:3874081 4.84E-148 dispersed
Cme11g00384 Cme-Chr11:3874081 Cme11g02527 Cme-Chr11:31730014 1.39E-46 dispersed
Cme10g00715 Cme-Chr10:4524541 Cme11g00384 Cme-Chr11:3874081 1.68E-15 transposed
Cme01g01268 Cme-Chr1:16029869 Cme11g00384 Cme-Chr11:3874081 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00384 Cme_Chr11 FPKM 6.62676 6.553649 4.54871 6.069935 4.849779 4.10006 4.745166 2.255335 2.337506 2.2962