Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00386 ATGGCCTCTTCAAATCAACAACCCACTTCTTCATCGTCATCTTCCCTCTATCCCTCCCTCGACATGAAAGACCTCGCCGAAAATCTCTTCCCCGACGAAGACCCCCCTGTTTCCGGTCACAAACACCCCGATTCCTCCGAACAAGTTCTCCTACAGATTCCCGGCGCCATACTCCATTTAATCGAAAGACAGAACAGTATCGAACTCGCTTCCGGTGAGTTCTCCATCGTGGGTCTCATCCAAGGTAACAACGTCGTCGCTGTACTCGCTCGTATTGGGGATCAAGTTCAATGGCCATTAGCTAAAGACGAACCCGCTGTAAAACTCGACGATTCTCACTACTTCTTCACTCTCAGCGTTCCCTCAAATGGGTTATCGGAGAATCCCGATTCCGTCGCCGGAAAAGCTAATCAAGAGCCGGAAATGTTAAACTACGGCCTGACCGTTGCGTCAAAAGGGCAGGAAGATCGATTAAAGGAGTTGGATCGTATATTAGATCAGTACAGTTGTTTTTCGGTCCAGAAAATGGAGGAATCAGCGAGATGGGAGGTGTTAGACGGATCGGTGGCGAAGGAAATCTCGCCGGAGGATATGGCGGTGTCTGAGGAAAAAAGGGAGCTGCTAGAAGAGAGATCTGCTGCTTATTGGACGACGTTGGCGCCGAACGTTGACGATTACAGTGGGAAAGTTGCGAGGTTGATTGCGGCGGGATCGGGACGGGTGATTAAGGGGATTTTGTGGTGTGGGGATGTAACTGTGGATCGATTGAATTGGGGAAATGAGTTTATGAAGAAACGGATGGGGCCTCGTTCTGATGTAGAGATAAGTTCAGCTGCTATGAAGAGTATAAAGAGTGTGAAGAAGATGACGAAGATGACGGAGAAAGTGGCGACCGGAATACTATCCGGGGTTGTGAAAGTGTCGGGATTCTTTACGAGTTCGATAGTGAACTCGAAAGTGGGGAAGAAATTCTTTAGTCTTCTTCCTGGAGAAATTGTTCTTGCTTCATTGGATGGATTTAACAAGGTTTGTGATGCCGTTGAAGTAGCAGGAAAGAATGTGATGTCAACGACGTCAGTTGTGACTACCGGACTTGTTTCAGAAAGATATGGAGAAGAAGCAGCGAAAGCAACAAATGAAGGGCTTGGTGCGGCAGGGCATGCGATAGGAACAGCATGGGCTGTGTTGAAGATAAGAAAGGCTTTGAACCCAAAAAGTGCTTTCAAGCCAACTACTCTTGTAAAAGCAGCTGCTGCCCATTCTAGTTCCTCAAGGTCTTCTAAATAA 1287 47.63 MASSNQQPTSSSSSSLYPSLDMKDLAENLFPDEDPPVSGHKHPDSSEQVLLQIPGAILHLIERQNSIELASGEFSIVGLIQGNNVVAVLARIGDQVQWPLAKDEPAVKLDDSHYFFTLSVPSNGLSENPDSVAGKANQEPEMLNYGLTVASKGQEDRLKELDRILDQYSCFSVQKMEESARWEVLDGSVAKEISPEDMAVSEEKRELLEERSAAYWTTLAPNVDDYSGKVARLIAAGSGRVIKGILWCGDVTVDRLNWGNEFMKKRMGPRSDVEISSAAMKSIKSVKKMTKMTEKVATGILSGVVKVSGFFTSSIVNSKVGKKFFSLLPGEIVLASLDGFNKVCDAVEVAGKNVMSTTSVVTTGLVSERYGEEAAKATNEGLGAAGHAIGTAWAVLKIRKALNPKSAFKPTTLVKAAAAHSSSSRSSK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3903103 3906444 - MELO3C020811.2.1 Cme11g00386 341049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00386 428 MobiDBLite consensus disorder prediction 26 41 - -
Cme11g00386 428 Pfam Senescence domain 233 418 IPR009686 -
Cme11g00386 428 PANTHER OS06G0717100 PROTEIN 4 425 - -
Cme11g00386 428 MobiDBLite consensus disorder prediction 25 45 - -
Cme11g00386 428 PANTHER SPARTIN 4 425 IPR045036 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00386 K19366 SPG20; spartin - csv:101218079 761.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00181 Cme-Chr2:1417892 Cme11g00386 Cme-Chr11:3903103 2.00E-29 dispersed
Cme06g02375 Cme-Chr6:30979897 Cme11g00386 Cme-Chr11:3903103 1.55E-169 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g148 . . . Bda08g00997 . . Bma05g00361 . . . Cma02g00252 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00490 . Chy11g00261 . . . . . . Bpe05g00284 . . Sed02g0073 Cmo02g00251 . . . . . . Cpe05g01377 Bhi10g01858 Tan05g1147 Cmetu11g2225 . Hepe08g0287 . . Cla02g01162 Cam02g1238 Cec02g1247 Cco02g1287 Clacu02g1220 Cmu02g1188 Cre02g1499 . Csa02g01384 . Cme11g00386
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002053 1 1 3 3 1 2 3 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 5 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00386 Cme_Chr11 FPKM 19.867924 21.293526 15.744827 16.057745 17.351847 19.742407 16.020483 19.551878 22.143705 18.570629