Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00388 ATGGCGATGGCTTTCAAAATGGCAACCACAGGAATGTGGGTAAGCGACGAGTGTAAGAATTCATTCATGGAGATGAAATGGAAGAAAGTGCATAGGTATATCGTGTTTAAGATCGATGAAGGATCGAGATTAGTCACCGTCGATAAAGTAGGCGGTCCTGCCGAAAGCTACGATGATCTCACCGCTTCATTACCAAACGATGACTGTCGATACGCGGTCTTCGATTTCGATTTCGTTACTGTTGATAATTGCCGTAAGAGCAAGATCTTCTTCATCGCTTGGTCACCGACGGAATCGAGAATAAGAGCGAAAATTTTGTATGCAACTTCAAAGGATGGATTGAGGAGAGTACTTGAAGGAATTCATTATGAAGTTCAAGCAACTGATCCAACGGAGATGGGGATCGATGTGATCAAGGACAGAGCAAAATGA 432 43.29 MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDVIKDRAK 143
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3928176 3929267 - MELO3C020809.2.1 Cme11g00388 341051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00388 143 PANTHER ACTIN DEPOLYMERIZING FACTOR 5-RELATED 5 143 - -
Cme11g00388 143 SMART adf_2 16 143 IPR002108 GO:0003779
Cme11g00388 143 CDD ADF_cofilin_like 10 142 IPR017904 GO:0015629|GO:0030042
Cme11g00388 143 PANTHER COFILIN-RELATED 5 143 IPR017904 GO:0015629|GO:0030042
Cme11g00388 143 SUPERFAMILY Actin depolymerizing proteins 6 141 - -
Cme11g00388 143 Pfam Cofilin/tropomyosin-type actin-binding protein 18 140 IPR002108 GO:0003779
Cme11g00388 143 Gene3D Severin 8 143 IPR029006 -
Cme11g00388 143 ProSiteProfiles ADF-H domain profile. 11 143 IPR002108 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00388 K05765 CFL; cofilin - csv:101217451 295.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01021 Cme-Chr4:13912597 Cme11g00388 Cme-Chr11:3928176 7.22E-67 dispersed
Cme11g00388 Cme-Chr11:3928176 Cme12g00260 Cme-Chr12:2977456 7.18E-58 dispersed
Cme11g00388 Cme-Chr11:3928176 Cme08g02383 Cme-Chr8:30711096 1.68E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g144 . . . . . . . . . . Cma02g00246 Cma20g00758 . Car20g00659 . . . . . . . . . . . . . . . . . Cone12ag1226 . . . Lsi10g00487 . . . . . . . . . . . Sed01g0206 Cmo02g00247 Cmo20g00754 . . . . . . Bhi10g01861 Tan05g1152 Cmetu11g1192 . Hepe08g0285 . . Cla02g01159 Cam02g1235 Cec02g1244 Cco02g1284 Clacu02g1216 Cmu02g1185 Cre02g1496 . Csa02g01382 . Cme11g00388
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009905 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 4 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00388 Cme_Chr11 FPKM 8.118145 9.241264 5.201436 4.80045 11.259609 10.712608 10.703295 0.284366 0.211433 0.349064