Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00393 ATGGGTTCTTTAAACTTGCCGCCGTCCATGACGGTGCTAAAATGGCTAGGATTTGTGTCCGCCGTATGGGTTCAGGCGATTTCTGGCAACAACTACACTTTCTCGAATTACTCCGACGCCTTGAAATCTCTGATGAATCTAACCCAACTTCAACTCAATAATCTCTCCGTCGCCAAAGACGTTGGGAAAGCGTTTGGACTTCTCGCCGGAATGGCTAGTGATAGGTTTCCGACTTGGGTCATTTTGCTTATTGGATCTGTTGAAGGTCTTGTTGGGTATGGCGCTCAATGGCTTGTTGTTAGTCGCAGGATCTCTCCTCTTTCTTATTGGCAGATGTGCATCTTCTTGTGTATGGGTGGAAACAGCACGACATGGATGAACACGGCGGTGCTAGTAACTTGCATCAGAAACTTCCGGAAGAATCGCGGCCCAGTTTCCGGCATTCTCAAAGGCTACGTCGGTCTCAGCACTGCCATTTTCACCGATCTCTGTTTTGCTTTGTTTTCCTCCGACCCATCTTCTTTCCTCCTCATGCTCTCCTTGGTCCCTTTCGCCGTCTGTCTCTTCGCCATGTTTTTCCTCCGTGAAATCCCAACTCAAATCACCATTACCGCCGCCGATACCCAACAAGAATCCAATTACTTTTCCGTCTTCAACGTTCTTGCTGTCGTCGTCGCCGTTTATCTCTTATGTTTCGATTTCATCAAAAACTCCGGCAGACTCATTTCCCAATTATACTCAATGGGGCTTCTGATTCTCCTTGGATCCCCTTTGATTATCCCGATATACTCATTTTTCAAGAGCTGGAACTCGATTCGGAGCCGGTTGGATCTGGAGGAGCCGCTAGTGAAAGAAGAAGCGGTGACAGGGGCGGTGAAGGAGGAAACAGGGGAAATTGCTATGATAGAACAGAGAGCGCCGGTGATTGGAGAAGAACATACGATATTTGAAGCGGTGAGAACGATTGATTTCTGGGTGCTGTTCGTGTCGTTTTTGTGTGGAGTTGGAACGGGATTGGCGGTGATGAACAATATGGGTCAGATCGGATTGGCTCTGGGTTACGCGGATGTATCCATGTTCGTTTCTCTTACAAGTATTTGGGGATTTTTTGGCCGGATTCTTTCCGGTACACTCTCCGAGCATTTTCTCAAGAAGGCAGGCACACCAAGGCCTCTATGGAACGCAGCATCTCAAATTCTAATGACCGTTGGATACGTTTTGATGGCGATGGCAATGCCGGGGTCTCTCTACATCGGTTCAGTCATCGTTGGGATCTGCTACGGCGTTCGTCTCTCCATCACTGTCCCCACCGCCTCTGAGCTCTTTGGTCTCAAATACTACGGTCTCATCTACAACATTCTCATCCTCAACCTCCCGATTGGCTCGTTCCTATTCTCAGGCCTTCTTGCAGGATTCCTTTACGACATGGAGGCGACTCCAACCGAGGGCGGCGGGAACACGTGCATCGGAGGGCATTGCTATAGAATTGTGTTTCTGGTGATGGCATTGGCTTGTGTAATTGGGTTTGTTTTGGACATTTGGTTGGCGTTTAGAACCAAAGAACTTTATTCCAAGCTTAAAGCAGCCAACAAGAGATCAACAAAAAAGGTAAACAACAACAATAACTCTTAG 1632 47.86 MGSLNLPPSMTVLKWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGMASDRFPTWVILLIGSVEGLVGYGAQWLVVSRRISPLSYWQMCIFLCMGGNSTTWMNTAVLVTCIRNFRKNRGPVSGILKGYVGLSTAIFTDLCFALFSSDPSSFLLMLSLVPFAVCLFAMFFLREIPTQITITAADTQQESNYFSVFNVLAVVVAVYLLCFDFIKNSGRLISQLYSMGLLILLGSPLIIPIYSFFKSWNSIRSRLDLEEPLVKEEAVTGAVKEETGEIAMIEQRAPVIGEEHTIFEAVRTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMFVSLTSIWGFFGRILSGTLSEHFLKKAGTPRPLWNAASQILMTVGYVLMAMAMPGSLYIGSVIVGICYGVRLSITVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGFLYDMEATPTEGGGNTCIGGHCYRIVFLVMALACVIGFVLDIWLAFRTKELYSKLKAANKRSTKKVNNNNNS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3987240 3990272 + MELO3C020805.2.1 Cme11g00393 341056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00393 543 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 10 536 - -
Cme11g00393 543 SUPERFAMILY MFS general substrate transporter 16 520 IPR036259 -
Cme11g00393 543 CDD MFS_Mch1p_like 13 508 - -
Cme11g00393 543 Gene3D MFS general substrate transporter like domains 321 543 IPR036259 -
Cme11g00393 543 Gene3D MFS general substrate transporter like domains 10 212 IPR036259 -
Cme11g00393 543 Pfam Nodulin-like 14 262 IPR010658 -
Cme11g00393 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 536 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00393 - - - csv:101216743 972.615
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01273 Cme11g00393 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00393 Cme-Chr11:3987240 Cme12g00372 Cme-Chr12:5205738 8.83E-105 dispersed
Cme03g00122 Cme-Chr3:1625988 Cme11g00393 Cme-Chr11:3987240 8.29E-107 transposed
Cme07g01506 Cme-Chr7:20963441 Cme11g00393 Cme-Chr11:3987240 2.64E-77 transposed
Cme07g02031 Cme-Chr7:25322006 Cme11g00393 Cme-Chr11:3987240 1.69E-102 transposed
Cme11g02487 Cme-Chr11:31488538 Cme11g00393 Cme-Chr11:3987240 7.91E-72 transposed
Cme12g00024 Cme-Chr12:299428 Cme11g00393 Cme-Chr11:3987240 1.51E-83 transposed
Cme01g01273 Cme-Chr1:16109525 Cme11g00393 Cme-Chr11:3987240 2.02E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g141 . Blo15g00373 Bda06g00482 . Bpe07g00721 . . Bma12g00928 . Cmo11g01732 Cma02g00243 Cma20g00761 . Car20g00663 . Cpe04g00583 . Bhi05g01728 . . . Hepe02g0432 . . Cla02g00435 Cam02g0444 Cec02g0442 Cco02g0460 Clacu02g0446 Cmu02g0440 Cre02g0774 . . . . Lsi10g00482 Csa07g00091 Chy11g00271 Cme01g01273 . . . . . . . . . Cmo02g00245 Cmo20g00758 . . . . Cpe16g00309 Cpe05g01382 Bhi10g01865 Tan05g1158 . . Hepe10g1374 . . Cla02g01155 Cam02g1231 Cec02g1240 Cco02g1280 Clacu02g1212 Cmu02g1181 Cre02g1490 Lsi11g01194 Csa02g01375 Chy01g00687 Cme11g00393
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g01483 . 1 171 Nodulin-like Gene Family AT4G19180 65.9 1.3e-45 181.8
Cme07g00805 . 24 283 Nodulin-like Gene Family AT3G45870 71.9 1.5e-100 362.8
Cme09g00340 CCT,ECH 12 377 Nodulin-like Gene Family AT3G28050 59.9 3.3e-119 425.2
Cme09g00340 CCT,ECH 127 335 Nodulin-like Gene Family AT3G28080 50.5 2.1e-50 196.1
Cme06g02562 . 1 356 Nodulin-like Gene Family AT5G47470 57.6 5.4e-104 374.8
Cme09g01613 . 2 342 Nodulin-like Gene Family AT5G47470 54.4 9.2e-96 347.4
Cme09g00340 CCT,ECH 10 335 Nodulin-like Gene Family AT5G40230 56.5 2.6e-95 345.9
Cme04g01911 CCT,ECH 1 320 Nodulin-like Gene Family AT5G40230 51.1 6.6e-83 304.7
Cme04g01914 CCT,ECH 7 327 Nodulin-like Gene Family AT5G40230 51.9 4.4e-79 292.0
Cme04g01912 . 1 169 Nodulin-like Gene Family AT5G40230 54.7 1.7e-38 157.1
Cme09g00340 CCT,ECH 12 335 Nodulin-like Gene Family AT5G40240 55.2 9.1e-93 337.4
Cme04g01914 CCT,ECH 5 315 Nodulin-like Gene Family AT5G40240 52.1 5.4e-77 285.0
Cme04g01912 . 1 148 Nodulin-like Gene Family AT5G40240 57.4 1.1e-37 154.5
Cme04g00502 CCT,ECH 19 276 Nodulin-like Gene Family AT3G53210 62.4 2.2e-85 312.4
Cme03g01914 CCT,ECH 16 285 Nodulin-like Gene Family AT3G53210 56.7 3.6e-83 305.1
Cme08g02377 . 78 337 Nodulin-like Gene Family AT2G37450 61.5 1.7e-85 312.8
Cme10g00877 . 98 357 Nodulin-like Gene Family AT2G37450 52.5 3.9e-69 258.5
Cme09g00551 . 73 306 Nodulin-like Gene Family AT2G37450 51.5 8.6e-61 230.7
Cme08g02377 . 12 320 Nodulin-like Gene Family AT2G37460 65.5 2.7e-116 415.6
Cme10g00877 . 11 357 Nodulin-like Gene Family AT2G37460 54.3 1.8e-99 359.8
Cme07g00859 CCT 15 345 Nodulin-like Gene Family AT2G37460 53.6 5.3e-96 348.2
Cme10g00878 . 8 346 Nodulin-like Gene Family AT2G37460 53.7 4.5e-95 345.1
Cme09g00551 . 1 327 Nodulin-like Gene Family AT2G37460 53.2 4.8e-89 325.1
Cme04g02125 CCT 12 339 Nodulin-like Gene Family AT2G37460 52.6 5.9e-87 318.2
Cme03g01914 CCT,ECH 1 395 Nodulin-like Gene Family AT1G75500 70.9 7.2e-157 550.4
Cme04g00502 CCT,ECH 19 393 Nodulin-like Gene Family AT1G75500 74.7 1.3e-150 529.6
Cme02g01709 . 7 340 Nodulin-like Gene Family AT1G75500 61.2 5.8e-114 407.9
Cme10g00503 . 12 368 Nodulin-like Gene Family AT1G60050 52.3 5.2e-96 348.2
Cme08g02377 . 12 312 Nodulin-like Gene Family AT5G13670 51.1 5.1e-83 305.1
Cme10g00877 . 12 332 Nodulin-like Gene Family AT2G39510 62.9 2.5e-114 409.1
Cme10g00878 . 8 360 Nodulin-like Gene Family AT2G39510 58.6 2.1e-113 406.0
Cme09g00562 . 8 371 Nodulin-like Gene Family AT2G39510 51.1 1.6e-105 379.8
Cme09g00551 . 1 325 Nodulin-like Gene Family AT2G39510 59.7 1.2e-103 373.6
Cme08g02377 . 13 332 Nodulin-like Gene Family AT2G39510 55.9 2.6e-103 372.5
Cme07g00859 CCT 18 370 Nodulin-like Gene Family AT2G39510 54.8 1.9e-101 366.3
Cme04g02125 CCT 16 337 Nodulin-like Gene Family AT2G39510 53.8 1.1e-90 330.5
Cme04g02124 . 13 334 Nodulin-like Gene Family AT2G39510 50.3 2.2e-86 316.2
Cme09g00340 CCT,ECH 12 335 Nodulin-like Gene Family AT4G15540 51.2 4.6e-86 315.1
Cme03g00574 . 27 280 Nodulin-like Gene Family AT4G08290 64.0 8.0e-89 323.9
Cme07g00859 CCT 14 265 Nodulin-like Gene Family AT4G08290 52.6 6.2e-73 271.2
Cme07g00859 CCT 12 356 Nodulin-like Gene Family AT4G08300 65.7 1.3e-123 439.9
Cme03g00574 . 32 352 Nodulin-like Gene Family AT4G08300 52.5 2.1e-92 336.3
Cme04g02125 CCT 8 361 Nodulin-like Gene Family AT4G08300 50.8 2.3e-91 332.8
Cme11g00082 . 8 261 Nodulin-like Gene Family AT5G64700 59.9 6.6e-77 284.3
Cme11g00081 CCT 3 258 Nodulin-like Gene Family AT5G64700 57.2 2.9e-69 258.8
Cme08g01049 . 1 255 Nodulin-like Gene Family AT5G64700 51.6 6.0e-62 234.6
Cme05g01459 CCT 1 368 Nodulin-like Gene Family AT4G30420 52.5 1.3e-102 370.2
Cme10g00733 . 49 421 Nodulin-like Gene Family AT5G07050 66.8 1.8e-142 502.7
Cme04g02125 CCT 10 339 Nodulin-like Gene Family AT5G07050 68.0 5.8e-125 444.5
Cme08g01439 CCT 6 378 Nodulin-like Gene Family AT5G07050 57.8 7.6e-117 417.5
Cme04g02124 . 7 336 Nodulin-like Gene Family AT5G07050 59.6 2.6e-109 392.5
Cme07g00859 CCT 18 338 Nodulin-like Gene Family AT5G07050 51.8 5.8e-93 338.2
Cme10g00733 . 54 380 Nodulin-like Gene Family AT3G56620 57.5 2.1e-100 362.8
Cme04g02125 CCT 12 343 Nodulin-like Gene Family AT3G56620 53.7 2.3e-99 359.4
Cme08g01439 CCT 13 396 Nodulin-like Gene Family AT3G56620 52.1 8.7e-99 357.5
Cme04g02124 . 9 351 Nodulin-like Gene Family AT3G56620 51.0 1.0e-94 344.0
Cme10g00503 . 3 374 Nodulin-like Gene Family AT1G70260 53.3 2.6e-103 372.5
Cme12g00762 . 4 368 Nodulin-like Gene Family AT1G09380 58.6 8.9e-112 400.6
Cme05g01521 . 1 331 Nodulin-like Gene Family AT1G09380 58.6 1.2e-111 400.2
Cme04g02125 CCT 9 359 Nodulin-like Gene Family AT2G40900 54.4 1.9e-104 376.3
Cme10g00733 . 54 398 Nodulin-like Gene Family AT2G40900 56.2 2.7e-103 372.5
Cme08g01439 CCT 13 391 Nodulin-like Gene Family AT2G40900 54.6 3.0e-102 369.0
Cme04g02124 . 9 332 Nodulin-like Gene Family AT2G40900 53.7 2.5e-96 349.4
Cme02g01709 . 1 354 Nodulin-like Gene Family AT3G18200 67.8 5.9e-127 451.1
Cme03g01914 CCT,ECH 16 362 Nodulin-like Gene Family AT3G18200 56.8 1.5e-106 383.3
Cme04g00502 CCT,ECH 19 356 Nodulin-like Gene Family AT3G18200 54.7 8.0e-100 360.9
Cme07g00859 CCT 12 362 Nodulin-like Gene Family AT1G44800 64.4 3.1e-125 445.3
Cme03g00574 . 30 372 Nodulin-like Gene Family AT1G44800 50.1 3.7e-94 342.0
Cme07g00805 . 108 378 Nodulin-like Gene Family AT5G45370 67.3 1.8e-101 365.9
Cme07g00859 CCT 12 315 Nodulin-like Gene Family AT1G21890 65.1 5.2e-114 407.9
Cme03g00574 . 29 330 Nodulin-like Gene Family AT1G21890 50.8 5.8e-89 324.7
Cme04g02125 CCT 8 315 Nodulin-like Gene Family AT1G21890 51.6 5.6e-84 308.1
Cme10g00733 . 51 353 Nodulin-like Gene Family AT1G21890 50.5 5.6e-84 308.1
Cme07g02031 . 1 558 Nodulin-like Gene Family AT1G80530 58.0 3.0e-180 628.6
Cme07g01506 . 1 416 Nodulin-like Gene Family AT4G19450 67.2 7.7e-149 523.9
Cme11g02487 . 22 420 Nodulin-like Gene Family AT4G19450 56.5 3.5e-125 445.3
Cme02g01913 . 5 538 Nodulin-like Gene Family AT1G74780 58.9 1.0e-177 620.2
Cme02g01914 . 10 527 Nodulin-like Gene Family AT1G74780 56.9 1.1e-168 590.1
Cme11g00393 CCT 9 540 Nodulin-like Gene Family AT4G34950 69.3 1.0e-215 746.5
Cme01g01273 CCT 34 392 Nodulin-like Gene Family AT4G34950 63.1 3.5e-136 482.3
Cme03g00122 . 6 600 Nodulin-like Gene Family AT5G14120 68.8 2.7e-232 801.6
Cme11g00393 CCT 1 384 Nodulin-like Gene Family AT2G16660 67.5 2.7e-143 505.4
Cme01g01273 CCT 28 392 Nodulin-like Gene Family AT2G16660 66.5 4.0e-139 491.5
Cme10g00102 . 15 565 Nodulin-like Gene Family AT2G39210 71.9 7.3e-225 776.9
Cme03g01238 . 31 583 Nodulin-like Gene Family AT2G39210 64.4 1.6e-208 722.6
Cme10g00105 . 3 560 Nodulin-like Gene Family AT2G39210 64.1 3.3e-201 698.4
Cme12g00372 . 1 579 Nodulin-like Gene Family AT2G39210 56.8 2.3e-186 649.0
Cme08g01273 . 26 581 Nodulin-like Gene Family AT2G39210 56.8 4.7e-179 624.8
Cme12g00349 . 16 561 Nodulin-like Gene Family AT2G39210 50.4 5.9e-150 528.1
Cme08g01881 . 16 524 Nodulin-like Gene Family AT2G39210 51.8 1.9e-148 523.1
Cme04g02499 . 11 448 Nodulin-like Gene Family AT2G39210 50.3 1.4e-138 490.3
Cme04g02496 . 17 346 Nodulin-like Gene Family AT2G39210 58.0 2.1e-107 386.7
Cme12g00352 . 2 207 Nodulin-like Gene Family AT2G39210 55.4 2.8e-59 226.9
Cme07g01506 . 6 564 Nodulin-like Gene Family AT3G01630 53.1 8.7e-151 530.8
Cme03g00122 . 6 437 Nodulin-like Gene Family AT3G01930 68.6 1.2e-165 579.7
Cme02g01913 . 3 537 Nodulin-like Gene Family AT1G18940 54.2 2.3e-166 582.4
Cme02g01914 . 7 520 Nodulin-like Gene Family AT1G18940 52.7 1.3e-153 540.0
Cme02g01913 . 5 539 Nodulin-like Gene Family AT2G34350 55.7 1.1e-160 563.5
Cme02g01914 . 11 525 Nodulin-like Gene Family AT2G34350 53.8 1.0e-150 530.4
Cme12g00372 . 16 582 Nodulin-like Gene Family AT2G28120 68.7 7.3e-222 766.9
Cme10g00102 . 9 562 Nodulin-like Gene Family AT2G28120 61.6 4.9e-194 674.5
Cme03g01238 . 29 588 Nodulin-like Gene Family AT2G28120 58.2 2.7e-184 642.1
Cme10g00105 . 1 564 Nodulin-like Gene Family AT2G28120 57.3 4.2e-177 618.2
Cme12g00349 . 15 565 Nodulin-like Gene Family AT2G28120 57.1 8.7e-175 610.5
Cme08g01273 . 24 581 Nodulin-like Gene Family AT2G28120 55.3 4.2e-169 591.7
Cme12g00361 . 1 577 Nodulin-like Gene Family AT2G28120 51.5 2.7e-160 562.4
Cme12g00357 . 14 545 Nodulin-like Gene Family AT2G28120 50.2 9.4e-153 537.3
Cme12g00366 . 7 561 Nodulin-like Gene Family AT2G28120 50.4 1.3e-149 526.9
Cme04g02496 . 14 346 Nodulin-like Gene Family AT2G28120 57.0 8.4e-101 364.8
Cme12g00352 . 4 211 Nodulin-like Gene Family AT2G28120 54.9 5.9e-62 235.7
Cme07g01506 . 1 569 Nodulin-like Gene Family AT1G31470 57.1 1.3e-170 596.7
Cme11g02487 . 28 610 Nodulin-like Gene Family AT1G31470 53.0 1.6e-155 546.6
Cme03g00326 . 18 217 Nodulin-like Gene Family AT1G76800 69.5 8.4e-69 256.9
Cme05g00386 . 1 196 Nodulin-like Gene Family AT1G76800 60.2 6.0e-59 224.2
Cme05g00386 . 3 196 Nodulin-like Gene Family AT3G25190 65.8 2.0e-63 239.2
Cme03g00326 . 24 217 Nodulin-like Gene Family AT3G25190 62.9 3.9e-59 224.9
Cme03g00326 . 4 217 Nodulin-like Gene Family AT1G21140 70.6 3.3e-73 271.6
Cme05g00386 . 9 196 Nodulin-like Gene Family AT1G21140 64.6 5.4e-63 237.7
Cme03g00326 . 7 214 Nodulin-like Gene Family AT3G43630 72.6 1.3e-72 269.6
Cme05g00386 . 9 193 Nodulin-like Gene Family AT3G43630 64.5 4.2e-60 228.0
Cme03g00326 . 4 217 Nodulin-like Gene Family AT3G43660 69.6 2.1e-72 268.9
Cme05g00386 . 9 196 Nodulin-like Gene Family AT3G43660 63.5 2.2e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002454 1 3 1 2 1 2 3 2 2 2 2 2 3 2 2 3 2 1 4 2 2 2 3 3 2 1 1 1 3 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00393 Cme_Chr11 FPKM 15.135965 18.904362 9.930671 15.025003 12.999107 14.631257 11.414538 16.11128 15.4038 14.320403