Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00393 ATGGGTTCTTTAAACTTGCCGCCGTCCATGACGGTGCTAAAATGGCTAGGATTTGTGTCCGCCGTATGGGTTCAGGCGATTTCTGGCAACAACTACACTTTCTCGAATTACTCCGACGCCTTGAAATCTCTGATGAATCTAACCCAACTTCAACTCAATAATCTCTCCGTCGCCAAAGACGTTGGGAAAGCGTTTGGACTTCTCGCCGGAATGGCTAGTGATAGGTTTCCGACTTGGGTCATTTTGCTTATTGGATCTGTTGAAGGTCTTGTTGGGTATGGCGCTCAATGGCTTGTTGTTAGTCGCAGGATCTCTCCTCTTTCTTATTGGCAGATGTGCATCTTCTTGTGTATGGGTGGAAACAGCACGACATGGATGAACACGGCGGTGCTAGTAACTTGCATCAGAAACTTCCGGAAGAATCGCGGCCCAGTTTCCGGCATTCTCAAAGGCTACGTCGGTCTCAGCACTGCCATTTTCACCGATCTCTGTTTTGCTTTGTTTTCCTCCGACCCATCTTCTTTCCTCCTCATGCTCTCCTTGGTCCCTTTCGCCGTCTGTCTCTTCGCCATGTTTTTCCTCCGTGAAATCCCAACTCAAATCACCATTACCGCCGCCGATACCCAACAAGAATCCAATTACTTTTCCGTCTTCAACGTTCTTGCTGTCGTCGTCGCCGTTTATCTCTTATGTTTCGATTTCATCAAAAACTCCGGCAGACTCATTTCCCAATTATACTCAATGGGGCTTCTGATTCTCCTTGGATCCCCTTTGATTATCCCGATATACTCATTTTTCAAGAGCTGGAACTCGATTCGGAGCCGGTTGGATCTGGAGGAGCCGCTAGTGAAAGAAGAAGCGGTGACAGGGGCGGTGAAGGAGGAAACAGGGGAAATTGCTATGATAGAACAGAGAGCGCCGGTGATTGGAGAAGAACATACGATATTTGAAGCGGTGAGAACGATTGATTTCTGGGTGCTGTTCGTGTCGTTTTTGTGTGGAGTTGGAACGGGATTGGCGGTGATGAACAATATGGGTCAGATCGGATTGGCTCTGGGTTACGCGGATGTATCCATGTTCGTTTCTCTTACAAGTATTTGGGGATTTTTTGGCCGGATTCTTTCCGGTACACTCTCCGAGCATTTTCTCAAGAAGGCAGGCACACCAAGGCCTCTATGGAACGCAGCATCTCAAATTCTAATGACCGTTGGATACGTTTTGATGGCGATGGCAATGCCGGGGTCTCTCTACATCGGTTCAGTCATCGTTGGGATCTGCTACGGCGTTCGTCTCTCCATCACTGTCCCCACCGCCTCTGAGCTCTTTGGTCTCAAATACTACGGTCTCATCTACAACATTCTCATCCTCAACCTCCCGATTGGCTCGTTCCTATTCTCAGGCCTTCTTGCAGGATTCCTTTACGACATGGAGGCGACTCCAACCGAGGGCGGCGGGAACACGTGCATCGGAGGGCATTGCTATAGAATTGTGTTTCTGGTGATGGCATTGGCTTGTGTAATTGGGTTTGTTTTGGACATTTGGTTGGCGTTTAGAACCAAAGAACTTTATTCCAAGCTTAAAGCAGCCAACAAGAGATCAACAAAAAAGGTAAACAACAACAATAACTCTTAG 1632 47.86 MGSLNLPPSMTVLKWLGFVSAVWVQAISGNNYTFSNYSDALKSLMNLTQLQLNNLSVAKDVGKAFGLLAGMASDRFPTWVILLIGSVEGLVGYGAQWLVVSRRISPLSYWQMCIFLCMGGNSTTWMNTAVLVTCIRNFRKNRGPVSGILKGYVGLSTAIFTDLCFALFSSDPSSFLLMLSLVPFAVCLFAMFFLREIPTQITITAADTQQESNYFSVFNVLAVVVAVYLLCFDFIKNSGRLISQLYSMGLLILLGSPLIIPIYSFFKSWNSIRSRLDLEEPLVKEEAVTGAVKEETGEIAMIEQRAPVIGEEHTIFEAVRTIDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYADVSMFVSLTSIWGFFGRILSGTLSEHFLKKAGTPRPLWNAASQILMTVGYVLMAMAMPGSLYIGSVIVGICYGVRLSITVPTASELFGLKYYGLIYNILILNLPIGSFLFSGLLAGFLYDMEATPTEGGGNTCIGGHCYRIVFLVMALACVIGFVLDIWLAFRTKELYSKLKAANKRSTKKVNNNNNS 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3987240 3990272 + MELO3C020805.2.1 Cme11g00393 341056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00393 543 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 10 536 - -
Cme11g00393 543 SUPERFAMILY MFS general substrate transporter 16 520 IPR036259 -
Cme11g00393 543 CDD MFS_Mch1p_like 13 508 - -
Cme11g00393 543 Gene3D MFS general substrate transporter like domains 321 543 IPR036259 -
Cme11g00393 543 Gene3D MFS general substrate transporter like domains 10 212 IPR036259 -
Cme11g00393 543 Pfam Nodulin-like 14 262 IPR010658 -
Cme11g00393 543 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 10 536 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme01g01273 Cme11g00393 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00393 Cme-Chr11:3987240 Cme12g00372 Cme-Chr12:5205738 8.83E-105 dispersed
Cme03g00122 Cme-Chr3:1625988 Cme11g00393 Cme-Chr11:3987240 8.29E-107 transposed
Cme07g01506 Cme-Chr7:20963441 Cme11g00393 Cme-Chr11:3987240 2.64E-77 transposed
Cme07g02031 Cme-Chr7:25322006 Cme11g00393 Cme-Chr11:3987240 1.69E-102 transposed
Cme11g02487 Cme-Chr11:31488538 Cme11g00393 Cme-Chr11:3987240 7.91E-72 transposed
Cme12g00024 Cme-Chr12:299428 Cme11g00393 Cme-Chr11:3987240 1.51E-83 transposed
Cme01g01273 Cme-Chr1:16109525 Cme11g00393 Cme-Chr11:3987240 2.02E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00393 - - csv:101216743 972.615