Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00399 ATGCCCACTTCTCCACTCGTAGCTTCTGCAACCGGGGTACGGTTCGCTCGCGACCTATCGGTTAGCCGCTCCTCGTTTTACGAAGTGCTTGGGATTCCTATGACAGCTTCTTGCCGGGAAATCAAGGCGGCTTATCGGAAGCTAGCGAGGATCTGTCATCCCGACGTTGTGGCGGAGAATTCAGCGGAGGAGTTTATTAAAATTCAAACGGCATATTCGACATTGTCGGATCCGGATAAAAGGGCGGATTACGACAGGGAGATTTGCAGAGCTCAATTGGTTTCGGTTTCGGGGTTGTCGTCTCGGACGCCGGTCTCGGGTTATTCCGGTTACTACACACGGCGAAATTGGGAGTCGGATCAATGTTGGTAG 372 52.42 MPTSPLVASATGVRFARDLSVSRSSFYEVLGIPMTASCREIKAAYRKLARICHPDVVAENSAEEFIKIQTAYSTLSDPDKRADYDREICRAQLVSVSGLSSRTPVSGYSGYYTRRNWESDQCW 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4046444 4047259 - MELO3C020799.2.1 Cme11g00399 341062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00399 123 Gene3D DnaJ domain 11 103 IPR036869 -
Cme11g00399 123 ProSiteProfiles dnaJ domain profile. 25 88 IPR001623 -
Cme11g00399 123 SUPERFAMILY Chaperone J-domain 22 91 IPR036869 -
Cme11g00399 123 SMART dnaj_3 24 80 IPR001623 -
Cme11g00399 123 PRINTS DnaJ domain signature 27 45 IPR001623 -
Cme11g00399 123 PRINTS DnaJ domain signature 60 80 IPR001623 -
Cme11g00399 123 Pfam DnaJ domain 26 85 IPR001623 -
Cme11g00399 123 CDD DnaJ 26 77 IPR001623 -
Cme11g00399 123 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 17 123 - -
Cme11g00399 123 PANTHER DNAJ PROTEIN HOMOLOG-LIKE 17 123 - -
Cme11g00399 123 ProSitePatterns Nt-dnaJ domain signature. 65 84 IPR018253 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00399 - - - cmo:103497311 250.366
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01108 Cme-Chr1:14001302 Cme11g00399 Cme-Chr11:4046444 5.20E-19 dispersed
Cme06g00366 Cme-Chr6:2263669 Cme11g00399 Cme-Chr11:4046444 3.41E-18 dispersed
Cme08g00932 Cme-Chr8:6145930 Cme11g00399 Cme-Chr11:4046444 1.84E-36 dispersed
Cme11g00399 Cme-Chr11:4046444 Cme07g02018 Cme-Chr7:25214555 1.09E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g133 . . . . . Bpe12g00115 . . . . . . . Car20g00667 . . . . . . . . . . . . . . . . . Cone8ag0852 . . Cone9ag1605 . . Chy11g00279 . Blo04g00560 Blo13g00517 Bda15g01040 Bda14g00609 Bpe15g00820 . Bma03g00601 Bma08g00760 . . . . . . . Cpe16g00304 . . . . . . . . Cla02g01148 Cam02g1225 Cec02g1232 Cco02g1274 Clacu02g1205 Cmu02g1174 Cre02g1483 . Csa02g01369 . Cme11g00399
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001923 4 1 3 3 4 1 3 2 1 2 2 2 2 2 2 2 1 3 3 2 2 2 2 2 2 2 2 4 2 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00399 Cme_Chr11 FPKM 0.234973 0.0 1.259525 1.269412 0.0 0.0 0.0 1.209194 0.615239 0.818357