Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00413 ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGGAAGAGAGGAAAGAACGAAGCAGACGATGAGAAGCGTGAGCTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCTGAGAGCACACGTCTCAACGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGGTGGCGATGATTATCTTGAGTTTGAGGATGAAGATATCGACAAGATTTAG 438 45.89 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGGGDDYLEFEDEDIDKI 145
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4165061 4166050 - MELO3C020786.2.1 Cme11g00413 341076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00413 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Cme11g00413 145 MobiDBLite consensus disorder prediction 1 25 - -
Cme11g00413 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cme11g00413 145 MobiDBLite consensus disorder prediction 122 145 - -
Cme11g00413 145 MobiDBLite consensus disorder prediction 116 145 - -
Cme11g00413 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 1 145 - -
Cme11g00413 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Cme11g00413 145 TIGRFAM eIF-1A: translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Cme11g00413 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
Cme11g00413 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Cme11g00413 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cme11g00413 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Cme11g00413 145 Gene3D - 2 145 IPR012340 -
Cme11g00413 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00489 Cme-Chr1:3524096 Cme11g00413 Cme-Chr11:4165061 9.32E-90 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00413 K03236 - pvy:116120272 252.292