Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00424 GAGTCTCTCACACAACGACCCTTCTCCTTCGTTCCTTCCCTCTCTCTCTCTATCCTCAATTCAATTCAACTCAACCATTCCCATTTCTCAAATTCCTTCTCTCTCTCTCTGTTCTATTCTTCCATGGAGGTCTTCTTCTCTTCCAACCCTCAATCACTCACCTTCAATCCATGTCTTCCTCTCAATTCTCCTTCCTCCTTCTCCTACTCTCGCCTCCGCTTCGTCCGCCGTCAATTCCTTGGCTCTTCTCACAATCTCCGCCCTCCCGATGCCCTGCGCTCTCGTCGAAGGTGCCGGAACCTTGGCCTCTTTGTTCAATCTCCGAGGTGCATTCTCCGAGCATCCTTAAGTTCCAATCCGGTTCTCATCGTTGTTGCTGTCGTTACTTTCTCTGCTGTATCCTTCATCTACATGAATTTAAATAGAAGGAAGAAGAATGCGGTTGAGCGTTCCCGATCTCCAAAGCTTGCATTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTTGATGGTCATGTAATGGGCTTTAGAGATCACCATGGCGAATTTTTAGAGCAGAACATTGCCGTAAAGGATAGAGCTGAGGAGAAGAGTTATTCTGGGGAAGAGGAGACTGTTCTGCAGCTTCAAAAATCTGGCCTCTCACATGAGGCCAGCGTCAATGAGACATTGCCGCCTTCTGTTTCTGAGGTTACTACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGAAAGTGAAGCAACAGATCCTTCTCTTCTTTCTGCTATATTCGAATCAGGCGTTCTGCAGCCTCTTATTTTTGCCAATGAAATGACTGACTTACGACTGAATGGATCTCATGTCAAATCCCACTCTGAATTGCCTGTTGTGGTCGATACAACTGAGCTTCCACCTGTTACTGGTCCTTTATATAGTGTGTATGATCAAGTGACTCAACATTTAAAAGAAGATGGTGAGCTTCTAAACGAGGAAAAATTAAGTAGTTCCAACTTTCAAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTACCAAGATACAGAGTCAAGTAATCAAACAGAAACTTCTTCCCGTACTTCTCATCTATACAATAAAAAATTTTCTTCACTGATGGTTAACGGTGTCTCCAGAGTGGCAGAATTAGTGTTAGAGGATTCTCTTCCAGTTGCAGGGTATGTTCAAAGAAAAGTACCTGATGTAAGATATAAGGAAGGTTCTTCAGGAAACAGAAAAAAATCTGGTGGCAACAATATTTCAGGACATGGGGAAAGAAAAGAACCCAGTCTGCATAAAGGAAAAGCTGTGAATGGGGTAACCCATCCAAATGGGAAGCATGTACATTACAAAAATCTTCATGTAGATCAATATAAATCATATAATCAATGCCTGAAAGGTGGAAGGCTGCATGACTGCATCAGAATACTTCAAGATATGGAAACAGAAGGGATATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCGCACTTATTCAAAACCCCACATTGAGTACGTTCAATATGCTCATGTCTGTATGTGCAAGTCGTCAAGATTCTGAAAGAGCTTTCCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTGTACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGGTCAAGTGGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGCGCGGTGGATCGTGCTTTTGACGTGCTTGCAGAAATGGGGGCCGAGTTACATCCTATAGAGCCGGATCATATTACAATTGGTGCTTTGATGAAGGCATGTGCAAATGCTGGTCAGGTTGATCGAGCAATAGAAGTGTACAAGATGATCCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGTGATTGGGACTTTGCTTCCAATGTATATCAAGATATGACCAGGAAAGGAGTGCAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAATCTTAGGAGAAGCCAAGACACTAGGGATACGTGTTGGCATTGTGTCATATAGTTCTTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCGTTGGCACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCTAACTGTATCAACTGTAAACGCACTGATAACTGCACTAATGTCACCTACAGGTGATGGGGAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGAATTAGGACTCTCCCCGAACAATATTACATACTCCATACTTACGGCAGCGAGTGAAAGGAATAATGATTTAGAAATTGCCCTGATGCTCCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACGATGTATAGGACAGCACAGGCCTTAATGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCAAGCATTGACGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATTCCGCCTTAAAAAGTAGACTCATAGAAAACATAGGAGTAAGTGCTGACTCATCAAGATCTTCAAATCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGCGCATTTTCACTGTTGGAGGAAGCTGCTTCACTTGGAGTTGCTACGTTTGTGTTCCCAAAAGGAAATCCTATTGTTGTAGATGCCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCAAACATAATGATCTTACTGCCGAATGAGACAACGCAAATTCTCTCTCCAAAGGGGGAGAGGACCATTAACCTTTCGGGAAGGGTTGGACAAGCAGTTGCGGCATTGTTGAGAAGACTTGGGCTTCCTTACCTGGGGAATGAATCAAGTGGAAAAATCAGAATCAATGGTTTGGCCTTGAGAAGATGGTTACAACCGAAACTTTCTGATTCTCTAAGTGGAAAACCAGGAGAGTTCGGCACGTTTCAGTCACGTCTAAGAAAAGGAATAAGCCACCAGCAGCGTAATATTCGCATTGGGAACCTATCATTGGATTAA 3342 42.88 ESLTQRPFSFVPSLSLSILNSIQLNHSHFSNSFSLSLFYSSMEVFFSSNPQSLTFNPCLPLNSPSSFSYSRLRFVRRQFLGSSHNLRPPDALRSRRRCRNLGLFVQSPRCILRASLSSNPVLIVVAVVTFSAVSFIYMNLNRRKKNAVERSRSPKLALSQLGRGINWSVDGHVMGFRDHHGEFLEQNIAVKDRAEEKSYSGEEETVLQLQKSGLSHEASVNETLPPSVSEVTTSKDSDSLFSDESEATDPSLLSAIFESGVLQPLIFANEMTDLRLNGSHVKSHSELPVVVDTTELPPVTGPLYSVYDQVTQHLKEDGELLNEEKLSSSNFQIEEPAREDIYMFYQDTESSNQTETSSRTSHLYNKKFSSLMVNGVSRVAELVLEDSLPVAGYVQRKVPDVRYKEGSSGNRKKSGGNNISGHGERKEPSLHKGKAVNGVTHPNGKHVHYKNLHVDQYKSYNQCLKGGRLHDCIRILQDMETEGILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASRQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAGQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAIEVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNVYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEILGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALMSPTGDGEQLQMAMDILTEMKELGLSPNNITYSILTAASERNNDLEIALMLLSQAKEDGIVPTLTMYRTAQALMVYREIIEAGIVPSIDVLSQVLGCLQIPHDSALKSRLIENIGVSADSSRSSNLCSLIDGFGEYDPRAFSLLEEAASLGVATFVFPKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILLPNETTQILSPKGERTINLSGRVGQAVAALLRRLGLPYLGNESSGKIRINGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISHQQRNIRIGNLSLD 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4260878 4271784 + MELO3C020773.2.1 Cme11g00424 341087

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00424 1113 Gene3D Tetratricopeptide repeat domain 761 817 IPR011990 GO:0005515
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 730 IPR002885 -
Cme11g00424 1113 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 114 1113 - -
Cme11g00424 1113 MobiDBLite consensus disorder prediction 216 236 - -
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 654 IPR002885 -
Cme11g00424 1113 MobiDBLite consensus disorder prediction 418 432 - -
Cme11g00424 1113 Gene3D Tetratricopeptide repeat domain 818 926 IPR011990 GO:0005515
Cme11g00424 1113 Gene3D Tetratricopeptide repeat domain 599 760 IPR011990 GO:0005515
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Cme11g00424 1113 MobiDBLite consensus disorder prediction 216 245 - -
Cme11g00424 1113 Gene3D Tetratricopeptide repeat domain 486 598 IPR011990 GO:0005515
Cme11g00424 1113 Pfam Pentacotripeptide-repeat region of PRORP 669 823 IPR033443 -
Cme11g00424 1113 Pfam Pentacotripeptide-repeat region of PRORP 521 656 IPR033443 -
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 766 800 IPR002885 -
Cme11g00424 1113 MobiDBLite consensus disorder prediction 402 442 - -
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 840 874 IPR002885 -
Cme11g00424 1113 TIGRFAM PPR: pentatricopeptide repeat domain 699 732 IPR002885 -
Cme11g00424 1113 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Cme11g00424 1113 TIGRFAM PPR: pentatricopeptide repeat domain 522 555 IPR002885 -
Cme11g00424 1113 TIGRFAM PPR: pentatricopeptide repeat domain 768 800 IPR002885 -
Cme11g00424 1113 TIGRFAM PPR: pentatricopeptide repeat domain 664 694 IPR002885 -
Cme11g00424 1113 TIGRFAM PPR: pentatricopeptide repeat domain 557 590 IPR002885 -
Cme11g00424 1113 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Cme11g00424 1113 Pfam Pentatricopeptide repeat domain 828 879 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00424 - - - csv:101204147 1981.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01799 Cme-Chr8:20892486 Cme11g00424 Cme-Chr11:4260878 1.21E-07 dispersed
Cme11g00424 Cme-Chr11:4260878 Cme03g01351 Cme-Chr3:23041028 6.95E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00424 Cme_Chr11 FPKM 2.584236 3.251063 9.311616 6.759144 21.279903 22.923449 20.438461 7.703646 8.720085 6.764483