Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00440 ACAAATTCTCATTCAAGCTCTGAAACTTCTCATTTTTACAACAATTTCTTAGAGACAAAACCACTCAAACTCACTCCTCTTTGGCTCTTTCTTTCACTTAAATCAAATACAGAAATGGGATTTCGTCTGCCTACGCTTCTCCTCAATGCCAAGCAAATATTCAGAACGCAAGCTGTCTCAACAAGATGTCACTCCAACATTCCCAAAGGCCACATTGCAGTTTACGTGGGCGAGAATCGACGGAAGCGATTTGTGGTGCCGGTATCATACTTGAACCATCCTTCATTTCTAAGTTTGCTCAACAGAGCTGAAGAAGAGTTTGGATTCAACCATCCAAGTGGGGGTTTGACAATTCCCTGCAAAGAAGATGCCTTCATTGATCTCACTTCAAGATTGCATACCTCGTGA 408 41.91 TNSHSSSETSHFYNNFLETKPLKLTPLWLFLSLKSNTEMGFRLPTLLLNAKQIFRTQAVSTRCHSNIPKGHIAVYVGENRRKRFVVPVSYLNHPSFLSLLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSRLHTS 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4316265 4316844 - MELO3C020758.2.1 Cme11g00440 341103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00440 135 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 39 134 IPR003676 GO:0009733
Cme11g00440 135 Pfam Auxin responsive protein 50 131 IPR003676 GO:0009733
Cme11g00440 135 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE 39 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00440 K14488 SAUR; SAUR family protein - csv:101210944 185.267
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme01g01310 Cme11g00440 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00427 Cme-Chr11:4286211 Cme11g00440 Cme-Chr11:4316265 4.43E-49 dispersed
Cme11g00436 Cme-Chr11:4306376 Cme11g00440 Cme-Chr11:4316265 1.69E-55 dispersed
Cme11g00440 Cme-Chr11:4316265 Cme11g00445 Cme-Chr11:4339633 5.28E-51 dispersed
Cme11g00438 Cme-Chr11:4309902 Cme11g00440 Cme-Chr11:4316265 1.09E-39 proximal
Cme11g00440 Cme-Chr11:4316265 Cme11g00446 Cme-Chr11:4341722 1.03E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g69 . . . . . . . . . . . Cma20g00793 . . Sed05g2272 . Cpe15g00572 Bhi05g01767 Tan02g0735 Cmetu01g0608 . . . . . . . . . . . . . . . Lsi10g00435 . . Cme01g01310 . . . . . . Bma03g00581 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g00440
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000045 7 14 1 1 5 16 0 0 13 4 12 13 24 19 19 31 17 1 0 16 18 3 0 3 14 20 13 24 12 19 339
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00440 Cme_Chr11 FPKM 0.690483 0.568333 18.523537 18.675856 52.137367 49.575401 54.068745 19.717691 16.929735 17.943468