Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00452 AAAACACCAAACGGCTTCAAAGCCTTCAAAGCCTTCAAAGCCATTCCTTATTCCTACGGTCACCGTCTTCTTCATCTTCTTCATCTTCTTCTTCTCCGAGCCCCTCCCATGGCGGCCGCCTCCACTCTCAACCTCCCTTCTCTCTCTTCCTCTTCATCTCTCTCTCATCCCACTCCCACTCTTCAAACCCATATTTCCATTTTCTCTAAAACCCTCCAAAAATCCCACTTTCCCTCTTCCCTTTCTCTTCCCAATCCTCACAAACCCATCTCCCTCTCCTCCGCCTCCAAATCCCCCATCTCCGATTTCTTCCCCGGTCACGACGAAGACGACTCTTCCGATGAAAAACTCCGCGAGGAGTGCGGTGTCGTTGGAATCTATGGCGACCCAGAAGCCTCTCGTCTCTGTTATTTAGCCCTTCACGCTCTCCAACACCGTGGCCAAGAAGGCGCTGGAATCGTTGCCGTCAATGAAAACGTTCTACAGTCTATTACCGGCGTTGGCCTTGTCTCTGAGGTTTTCAATCAAACAAAACTTGATCAATTACCTGGGGATTCTGCGATTGGTCATGTTCGTTACTCCACTGCTGGATCTTCTATGCTTAAGAATGTTCAACCCTTTGTTGCTGGTTACAGATTTGGGTCTGTTGGGGTTGCTCATAATGGTAATTTAGTTAATTATCGTTCTCTTAGAGCTAAGCTTGAAGATACTGGTTCTATTTTCAATACTAGTTCTGATACTGAGGTTGTTCTTCACCTTATTGCAATTTCAAAACATAGACCTTTCTTGTTGAGGATTGTTGATGCTTGTGAACAGCTTGAAGGAGCTTATTCTATGGTTTTTATTACTGAAGATAAATTAGTTGCTGTTCGTGACCCTTTTGGTTTTAGGCCTTTGGTTATGGGTAGGAGAAGTAATGGGGCTGTTGTATTTGCTTCTGAAACTTGTGCTCTTGATTTAATTGAAGCTACATATGAAAGAGAAGTGTTTCCTGGGGAAGTTTTAGTAGTTGATAAGAATGGTATTCAATCCCTCTGTTTAATGGCTCATCCTCAGCCTAAATCTTGCATTTTTGAACACATATACTTTGCTCTTCCCAACTCCGTTGTCTTTGGCCGTTCTGTCTACGAATCCCGCCGAGCATTCGGGGAGATACTTGCCACCGAAGCCCCTGTTGATTGTGATGTTGTAATAGCTGTCCCGGATTCAGGAGTAGTAGCTGCTCTTGGGTATGCAGCCAAAGCTGGGGTAGCTTTCCAACAAGGTCTCATAAGGTCTCATTATGTGGGGAGGACATTCATCGAACCATCGCAGAAGATTCGTGACTTTGGTGTAAAGCTGAAGCTGTCACCGGTTCGAGCAGTGTTGGAAGGGAAGAGAGTTGTTGTTGTGGATGACTCAATTGTTAGAGGCACAACATCTTCAAAGATTGTGAGATTGTTAAAGGAAGCAGGAGCGAAAGAAGTTCATATGAGGATAGCTAGTCCTCCAATTATAGCATCGTGTTATTATGGAGTGGACACACCAAGTTCTGAAGAACTAATCTCCAACAGGATGAGCGTGGAGGAAATAAGAGAGTTTATAGGCTCTGATTCACTTGCTTTTCTGCCATTTGGTAGCTTGGAAAAGCTTTTGGGAAATGATTCTTCAAAGTTTTGCTATGCTTGCTTTTCAGGTAACTACCCAGTTGAGCCAAGAGAATTAAAAGTGAAAAGGGTGGGAGATTTTGTTGATGATGGGTTGAATGGAAGCTTGGAATCCATTGATGGAGGTTGGGTTCAAGCCAATGTAAACCAGAGTCTTGACAATAATCTCACAGTGGAGAAAGTTGGAGGTCTTTGA 1842 44.08 KTPNGFKAFKAFKAIPYSYGHRLLHLLHLLLLRAPPMAAASTLNLPSLSSSSSLSHPTPTLQTHISIFSKTLQKSHFPSSLSLPNPHKPISLSSASKSPISDFFPGHDEDDSSDEKLREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVAVNENVLQSITGVGLVSEVFNQTKLDQLPGDSAIGHVRYSTAGSSMLKNVQPFVAGYRFGSVGVAHNGNLVNYRSLRAKLEDTGSIFNTSSDTEVVLHLIAISKHRPFLLRIVDACEQLEGAYSMVFITEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVFPGEVLVVDKNGIQSLCLMAHPQPKSCIFEHIYFALPNSVVFGRSVYESRRAFGEILATEAPVDCDVVIAVPDSGVVAALGYAAKAGVAFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIASCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFGSLEKLLGNDSSKFCYACFSGNYPVEPRELKVKRVGDFVDDGLNGSLESIDGGWVQANVNQSLDNNLTVEKVGGL 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4421323 4423332 + MELO3C020749.2.1 Cme11g00452 341115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00452 613 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 75 593 - -
Cme11g00452 613 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 121 340 IPR017932 -
Cme11g00452 613 Pfam Glutamine amidotransferase domain 201 318 IPR017932 -
Cme11g00452 613 CDD GPATase_N 121 371 IPR035584 -
Cme11g00452 613 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 75 593 - -
Cme11g00452 613 TIGRFAM purF: amidophosphoribosyltransferase 121 562 IPR005854 GO:0004044|GO:0009113
Cme11g00452 613 CDD PRTases_typeI 383 494 IPR000836 -
Cme11g00452 613 MobiDBLite consensus disorder prediction 91 115 - -
Cme11g00452 613 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 121 344 IPR029055 -
Cme11g00452 613 Pfam Phosphoribosyl transferase domain 379 490 IPR000836 -
Cme11g00452 613 Hamap Amidophosphoribosyltransferase [purF]. 120 561 IPR005854 GO:0004044|GO:0009113
Cme11g00452 613 SUPERFAMILY PRTase-like 356 567 IPR029057 -
Cme11g00452 613 Gene3D - 380 544 IPR029057 -
Cme11g00452 613 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 121 562 IPR029055 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00452 K00764 purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14] - csv:101203840 1073.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g59 Blo02g00658 . . Bda08g00971 . . Bma05g00406 . . . Cma02g00358 Cma20g00802 Car02g00225 Car20g00687 . . . . . . . . . . . . . . . . . Cone12ag1199 Cone8ag1246 Cone3ag1203 . Lsi10g00425 . Chy11g00327 . . . . . . . . . Sed01g0252 Cmo02g00360 Cmo20g00810 . . . . Cpe16g00281 Cpe05g01298 Bhi10g01929 Tan05g1228 Cmetu11g1361 . Hepe08g0964 . . . . . . . . . . Csa02g01318 . Cme11g00452
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme11g00452 . 110 594 PRT Gene Family AT2G16570 85.0 5.3e-241 830.5
Cme11g00452 . 109 594 PRT Gene Family AT4G34740 85.4 1.1e-241 832.8
Cme11g00452 . 114 567 PRT Gene Family AT4G38880 75.4 3.4e-197 684.9
Cme03g02097 . 79 260 PRT Gene Family AT1G27450 81.9 1.2e-80 296.2
Cme06g02603 . 6 167 PRT Gene Family AT1G27450 77.8 7.8e-69 256.9
Cme03g01606 . 11 183 PRT Gene Family AT1G27450 68.8 3.6e-66 248.1
Cme09g01640 . 7 210 PRT Gene Family AT1G27450 55.1 4.0e-57 218.0
Cme03g01606 . 33 189 PRT Gene Family AT1G80050 79.0 1.9e-66 248.8
Cme06g02603 . 32 167 PRT Gene Family AT1G80050 78.7 4.2e-58 221.1
Cme03g02097 . 108 257 PRT Gene Family AT1G80050 70.7 6.6e-56 213.8
Cme09g01640 . 30 210 PRT Gene Family AT1G80050 54.5 1.9e-47 185.7
Cme06g02603 . 6 99 PRT Gene Family AT4G22570 88.3 1.7e-44 175.3
Cme03g02097 . 83 175 PRT Gene Family AT4G22570 80.6 1.7e-39 158.7
Cme03g01606 . 11 100 PRT Gene Family AT4G22570 77.8 4.5e-37 150.6
Cme09g01640 . 6 124 PRT Gene Family AT4G22570 63.9 4.5e-37 150.6
Cme06g02603 . 7 98 PRT Gene Family AT4G12440 88.0 2.1e-41 164.9
Cme03g02097 . 79 174 PRT Gene Family AT4G12440 79.2 3.8e-38 154.1
Cme03g01606 . 1 148 PRT Gene Family AT5G11160 79.7 7.6e-63 236.9
Cme03g02097 . 84 223 PRT Gene Family AT5G11160 73.6 2.6e-55 211.8
Cme06g02603 . 10 147 PRT Gene Family AT5G11160 72.5 1.9e-53 205.7
Cme09g01640 . 8 164 PRT Gene Family AT5G11160 55.7 2.0e-42 169.1
Cme03g01066 . 20 205 PRT Gene Family AT1G71750 62.9 4.6e-67 251.1
Cme01g01088 . 16 468 PRT Gene Family AT1G55810 85.7 1.9e-225 778.5
Cme06g01664 . 19 482 PRT Gene Family AT1G55810 73.5 1.0e-199 693.0
Cme01g01088 . 65 467 PRT Gene Family AT3G27440 77.2 1.5e-184 642.5
Cme06g01664 . 80 482 PRT Gene Family AT3G27440 75.2 2.5e-179 625.2
Cme06g01664 . 1 482 PRT Gene Family AT3G27190 86.1 2.5e-247 851.3
Cme01g01088 . 3 467 PRT Gene Family AT3G27190 74.1 2.5e-207 718.4
Cme08g02442 . 7 229 PRT Gene Family AT3G53900 77.6 2.7e-103 372.1
Cme01g01088 . 1 468 PRT Gene Family AT4G26510 83.8 2.2e-232 801.6
Cme06g01664 . 11 482 PRT Gene Family AT4G26510 75.2 3.4e-209 724.5
Cme06g01664 . 1 482 PRT Gene Family AT5G40870 86.3 2.7e-246 847.8
Cme01g01088 . 44 470 PRT Gene Family AT5G40870 80.1 5.6e-207 717.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005155 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00452 Cme_Chr11 FPKM 23.15659 22.696056 17.781254 16.131659 5.951132 3.375248 5.145489 7.555343 8.312151 11.790867