Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00468 ATGGACGACTGTATTAGCAGCGATGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCTACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTCGAGTTATGGACTTACTATCGTTGAGAGAATACCATGCTCGGACGTTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATAGTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTTATTGTGAAAATAAATGAGGGTCAAAGTCGGAGGATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCCTACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCTGAGGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCAGAGATGAATCTGAAACTGTTAACTGGATTACTGTACATACAAAGCCCTGCCCTAAGTGCCATAAACCTGTTGAGAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAGGAATCTATACAAGAGAAGATCTCAATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCGTACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCATTCGATCAATATACTAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAAGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCACCATCTGACTGTGGTACAAGTGGTAAAGTGGAGAGTACTTTTCTACACTTTTCTTAA 1662 41.82 MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENRSNSSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGKVESTFLHFS 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4581977 4586425 - MELO3C021950.2.1 Cme11g00468 341131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00468 553 SMART ibrneu5 190 252 IPR002867 -
Cme11g00468 553 SMART ibrneu5 260 325 IPR002867 -
Cme11g00468 553 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Cme11g00468 553 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Cme11g00468 553 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 508 - -
Cme11g00468 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Cme11g00468 553 SUPERFAMILY RING/U-box 260 325 - -
Cme11g00468 553 Gene3D - 248 496 - -
Cme11g00468 553 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 508 IPR031127 GO:0004842|GO:0016567
Cme11g00468 553 MobiDBLite consensus disorder prediction 1 28 - -
Cme11g00468 553 SUPERFAMILY RING/U-box 191 259 - -
Cme11g00468 553 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Cme11g00468 553 Pfam Ariadne domain 329 544 IPR045840 -
Cme11g00468 553 SUPERFAMILY RING/U-box 114 202 - -
Cme11g00468 553 MobiDBLite consensus disorder prediction 11 28 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00468 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1088.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01015 Cme-Chr5:14651663 Cme11g00468 Cme-Chr11:4581977 1.62E-59 dispersed
Cme11g00468 Cme-Chr11:4581977 Cme07g01145 Cme-Chr7:14957495 1.39E-11 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme11g00468 . 164 543 ARIADNE family AT4G34370 77.1 2.8e-178 621.7
Cme11g00468 . 58 544 ARIADNE family AT2G16090 77.3 3.2e-226 781.2
Cme11g00468 . 28 543 ARIADNE family AT3G27710 61.7 3.0e-185 645.2
Cme11g00468 . 44 522 ARIADNE family AT3G27720 54.5 5.2e-144 508.1
Cme05g01015 . 2 477 ARIADNE family AT1G05890 72.5 6.6e-218 753.8
Cme03g00666 . 116 584 ARIADNE family AT1G05890 73.1 4.0e-215 744.6
Cme05g01015 . 1 532 ARIADNE family AT1G65430 75.0 1.4e-249 859.0
Cme03g00666 . 71 643 ARIADNE family AT1G65430 67.7 5.8e-240 827.0
Cme05g01015 . 1 395 ARIADNE family AT2G31780 56.7 9.5e-145 510.4
Cme03g00666 . 112 509 ARIADNE family AT2G31780 57.5 4.4e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00468 Cme_Chr11 FPKM 54.989899 57.647289 241.51152 247.969666 61.340107 43.495506 46.083477 31.816662 26.999273 34.017509