Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g00468 | ATGGACGACTGTATTAGCAGCGATGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCTACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTCGAGTTATGGACTTACTATCGTTGAGAGAATACCATGCTCGGACGTTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATAGTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTTATTGTGAAAATAAATGAGGGTCAAAGTCGGAGGATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCCTACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCTGAGGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCAGAGATGAATCTGAAACTGTTAACTGGATTACTGTACATACAAAGCCCTGCCCTAAGTGCCATAAACCTGTTGAGAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCCACGGGTCGAGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTATCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAGGAATCTATACAAGAGAAGATCTCAATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGACTTTTCAGATCAAGGCGGGTTCTATCGTACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCATTCGATCAATATACTAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAAGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCACCATCTGACTGTGGTACAAGTGGTAAAGTGGAGAGTACTTTTCTACACTTTTCTTAA | 1662 | 41.82 | MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENRSNSSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGKVESTFLHFS | 553 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 4581977 | 4586425 | - | MELO3C021950.2.1 | Cme11g00468 | 341131 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g00468 | 553 | SMART | ibrneu5 | 190 | 252 | IPR002867 | - | |
| Cme11g00468 | 553 | SMART | ibrneu5 | 260 | 325 | IPR002867 | - | |
| Cme11g00468 | 553 | Pfam | IBR domain, a half RING-finger domain | 191 | 252 | IPR002867 | - | |
| Cme11g00468 | 553 | ProSiteProfiles | Zinc finger RING-type profile. | 119 | 167 | IPR001841 | - | |
| Cme11g00468 | 553 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 6 | 508 | - | - | |
| Cme11g00468 | 553 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 204 | IPR013083 | - | |
| Cme11g00468 | 553 | SUPERFAMILY | RING/U-box | 260 | 325 | - | - | |
| Cme11g00468 | 553 | Gene3D | - | 248 | 496 | - | - | |
| Cme11g00468 | 553 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 6 | 508 | IPR031127 | GO:0004842|GO:0016567 | |
| Cme11g00468 | 553 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cme11g00468 | 553 | SUPERFAMILY | RING/U-box | 191 | 259 | - | - | |
| Cme11g00468 | 553 | ProSiteProfiles | TRIAD supradomain profile. | 115 | 329 | IPR044066 | - | |
| Cme11g00468 | 553 | Pfam | Ariadne domain | 329 | 544 | IPR045840 | - | |
| Cme11g00468 | 553 | SUPERFAMILY | RING/U-box | 114 | 202 | - | - | |
| Cme11g00468 | 553 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme05g01015 | Cme-Chr5:14651663 | Cme11g00468 | Cme-Chr11:4581977 | 1.62E-59 | dispersed | |
| Cme11g00468 | Cme-Chr11:4581977 | Cme07g01145 | Cme-Chr7:14957495 | 1.39E-11 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g00468 | K11968 | - | csv:101205066 | 1088.56 |