Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00475 ATGGGGAAAGGGAACGGATGCGTACCTAGCAAGAACGGACCATTGGTAACCGTCTCCGATACAAATCCAATTCCAATTCCAATTCCAATTCCAATTCCCGATCAACTAAAATCCAAAGCCGGAGAAATCTCCAGGAATCTCAGAATCTTCATCGTCTATTACTCCATGTACGGTCACGTCGATCTCTTGGCCAAGAGGATGAAGAAAGGAGTCGATTCTGTTGACGGCGTCGAAGGTGTTTTGTTTAAGGTGCCGGAGACTCTGCCGTTGGAAACGCTGGAACAGATGAGGGTTCCGGTGAAGGATGATGGCGTGCCGGTGATTTCCGTGGAGGAGATGGTGGAGGCGGATGGATTCCTGTTTGGATTTCCGACGAGGTACGGATCTATGGCGGCACAAATGAAATCGTTTTTTGATTCGACAATTGTTCTTTGTCAGGATCAGAGATTGGCCGGAATTCCCGCCGGATTCTTTGTCAGTACGGGAACTCAAGGCGGCGGCCAAGAGACGACGGCGTTAACAGCAGTGAGTGTTCTAGCATATCATGGGATGGTGTATGTTCCAATAGGGTACACTTTTGGGAGTGAAATGAGTAATTTGGAGTCCATAAGAGGAGGATCTCCATATGGGGCTGGAGTCTTCTCTGGTGATGGCTCAAGACCTCTTTCTTCCATTGAGCTTGATCTTGCTCATCATCAAGGCAAGTACATGGCTACCCTACTTAAACGACGATCCCTCCCTCGTTGA 747 48.59 MGKGNGCVPSKNGPLVTVSDTNPIPIPIPIPIPDQLKSKAGEISRNLRIFIVYYSMYGHVDLLAKRMKKGVDSVDGVEGVLFKVPETLPLETLEQMRVPVKDDGVPVISVEEMVEADGFLFGFPTRYGSMAAQMKSFFDSTIVLCQDQRLAGIPAGFFVSTGTQGGGQETTALTAVSVLAYHGMVYVPIGYTFGSEMSNLESIRGGSPYGAGVFSGDGSRPLSSIELDLAHHQGKYMATLLKRRSLPR 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4628628 4630524 + MELO3C021944.2.1 Cme11g00475 341138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00475 248 Gene3D - 46 244 IPR029039 -
Cme11g00475 248 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 39 246 - -
Cme11g00475 248 SUPERFAMILY Flavoproteins 48 243 IPR029039 -
Cme11g00475 248 PANTHER NAD(P)H DEHYDROGENASE (QUINONE) FQR1-LIKE 2-RELATED 39 246 - -
Cme11g00475 248 Pfam NADPH-dependent FMN reductase 61 190 IPR005025 GO:0016491
Cme11g00475 248 ProSiteProfiles Flavodoxin-like domain profile. 49 237 IPR008254 GO:0010181
Cme11g00475 248 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 48 242 IPR010089 GO:0003955|GO:0010181
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00475 K03809 wrbA; NAD(P)H dehydrogenase (quinone) [EC:1.6.5.2] - csv:101211762 434.106
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00825 Cme-Chr8:5463907 Cme11g00475 Cme-Chr11:4628628 1.19E-103 dispersed
Cme11g00475 Cme-Chr11:4628628 Cme11g01372 Cme-Chr11:20493769 2.87E-79 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g556 . Blo15g00688 Bda06g00948 . Bpe07g00459 . . Bma12g00546 . . Cma02g00425 . Car02g00281 . . . . . . . . . . . . . . . . . . . . Cone3ag1142 . Lsi10g00335 . Chy11g00416 . . . . . . . . . . Cmo02g00426 . . . . . . Cpe05g01236 . . . . . . . Cla09g01743 Cam09g1834 Cec09g1895 Cco09g1987 . . Cre01g0676 . Csa02g01222 . Cme11g00475
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012355 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00475 Cme_Chr11 FPKM 22.471529 22.214893 21.177326 21.923895 23.644318 22.731874 23.106243 43.760033 39.535568 37.465736