Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00477 ATGCCGACCTCCCCTTCTCCTTCTCCTTCTCTGTCTCCTTCCACCTCCGCCGCCGCCGCCGCCAATTTCCCTCCTCCTTCATCCTTACAGTCGGCGAAGCTCCCAGTCGACTTCAGTCCCCCTCTAATCGCTATGGTTGTCGTCATCGCTACTGCCTTTCTCATCGTCACTTACTCTCGCCTAATCTCTCGCCATCTCGTCCCTCCCATTCTCCACCTCCTCCGTCTCCACCGCCGTCGCTGGCGCCGGTGGCGCCGCCGCCGTCGACGTGCTGCTCGATCTTACATCCCATCCTCCTCTGGCGGCGACTTGGATTCACTCCCTTACGATTCGCCTTTCTTCGAACCTACTACGGATGCCTTTCATGTATTCTCTCCGTACGGTCTCGACGAATCAGTAATCAAAACGATTCCGCTTTCCGTCTATACTGCCAAAAGCCGTGACCGTGAGTGCGCCGTTTGTCTTCTGGAATTTGAAGACGATGATTACGTTAGAACGTTACCGATTTGTTCTCACGCCTTTCATGTTGATTGTATTGATGTATGGCTTAGATCACATGCCAACTGTCCTCTCTGTCGCGCGGTGGTTTTTAGGCCGGAATCTCCATTCACGCCGGTTATGGCGGCTAGAATCCGGCCAAGCTTAGACGATACGATCTTACGAAGCATCGTATTGGAACCGTTAGCGGAAGGTCCTCTTATACCCAATCGAGATTCTTATCACGCAACGGAATCAGAGATCACGCCTTGTATTGATGAGCCACGAAATAGCAATTCCGTGGAGGATCAAATGAACGGAAGAGATTTTTTGTTGAAACGATCGTATTCATTCGGATTCGAACGGAGCTTAGCGTCGGAGAGAATGATTCTAGAACCAGCAACCACGTCTCCATGGAGGTACCGTCGTGGAAGCTTCTGGAGCAAACGGCCGTCACCATTCGGATCTCTACCGAAAGCGAGAGTATTCTCATTCCGATACTACAGAGGTATGAAGTCCCCGTTCTTCAGACGAAGAGGAGGATTCTTTCCGTTATCGGAATCAAGCTGGAGATTCTCCAACGGCGTAGGTGGAGGTTCATCGAGACGGAGTAAGTCAATGACGAGTCCAATGTTTCTCCGATCGTCAGTAACCGGCGGAGGAGGAGGAGGAGGAGCGGCGTTTTCGTCGAGCCGGTTGAGATGCGGGGATCCCGAGGCGTTATTATCACCGGAGAGATTCAATAGAAGATGA 1230 52.03 MPTSPSPSPSLSPSTSAAAAANFPPPSSLQSAKLPVDFSPPLIAMVVVIATAFLIVTYSRLISRHLVPPILHLLRLHRRRWRRWRRRRRRAARSYIPSSSGGDLDSLPYDSPFFEPTTDAFHVFSPYGLDESVIKTIPLSVYTAKSRDRECAVCLLEFEDDDYVRTLPICSHAFHVDCIDVWLRSHANCPLCRAVVFRPESPFTPVMAARIRPSLDDTILRSIVLEPLAEGPLIPNRDSYHATESEITPCIDEPRNSNSVEDQMNGRDFLLKRSYSFGFERSLASERMILEPATTSPWRYRRGSFWSKRPSPFGSLPKARVFSFRYYRGMKSPFFRRRGGFFPLSESSWRFSNGVGGGSSRRSKSMTSPMFLRSSVTGGGGGGGAAFSSSRLRCGDPEALLSPERFNRR 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4641352 4642639 + MELO3C021942.2.1 Cme11g00477 341140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00477 409 MobiDBLite consensus disorder prediction 354 390 - -
Cme11g00477 409 MobiDBLite consensus disorder prediction 354 374 - -
Cme11g00477 409 Pfam Ring finger domain 150 193 IPR001841 -
Cme11g00477 409 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 5 377 IPR044675 -
Cme11g00477 409 CDD RING-H2_PA-TM-RING 150 193 - -
Cme11g00477 409 SMART ring_2 151 192 IPR001841 -
Cme11g00477 409 ProSiteProfiles Zinc finger RING-type profile. 151 193 IPR001841 -
Cme11g00477 409 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 377 - -
Cme11g00477 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 197 IPR013083 -
Cme11g00477 409 SUPERFAMILY RING/U-box 147 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00477 Cme-Chr11:4641352 Cme08g00747 Cme-Chr8:4978798 1.77E-22 dispersed
Cme11g00477 Cme-Chr11:4641352 Cme06g00503 Cme-Chr6:3180442 4.76E-23 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00477 - K19041 csv:101206300 699.893