Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g00480 ATGGCTGGGATTCTCAAAAAGTTTTTTCACGAGAAGCCTTCTTCTCCTGTTAATCATGAGGATTTTACTGGTGAATATTCTTTTGCCATTGAGTATAAAGGTCCTGGAATTAATTACGAGATTCCTCGTGCAGTTCCTATAAATGTTGATTATATTCCAACTGCTTCTGTAGTTCTTTCATCATCTCAATTCAGTGATGATTTATCATCTCTGCCTGTGATACAACCCATTGTTAAGAAACTAAAGAGGGGTTCAAGTTCCAGCCCTAATTCTGTAATTTCTTCAACTTCAGAAATCCAGGAAGATGGGGGCGTTTGCCTCCATGCCAACAAGGAAGATAAATGTAATATCAATTCGTGTGATGGAGTTGAAAGTTCTAGTGAACTTGAGAATTTCAATGAGCTGAAAGGAAGAATAGGAGGGGTAGAATCATTGGAAATTAAGAATGAAGAGGATTTTCAAGGCTATTCGAATTCCAGCGACTCGGAATCAGTAGAATCGGGTTTGAGTTCGTCTTCTGGAATTTTTGCTGTAAGAGAGGAAGAGGAAGCTGACAATGAAACTCAGCCTAGGCATGGCAGAAGGCCATCAGCTGTTACCTTTCTTGATCCCCAAACGAGCAACACTATTTCTGAAGAGGCTGAATCAAGTCAATTTGAGGGTGAAAGCATTCAAGAGATGCCTCGAGCTGAAAGGAAAGGAAAAAAAGGATCGTGCTACTTCTGCCTTAAAGGAAACCGTTTCACTGAAAAGGAAGTATGCGTTGTTTGTGGAGCCAAATATTGCTTTGACTGTATAATCAGAGCAATGGGAACAATGCCAGAAGGAAGAAAGTGTATCTCTTGCATTGGGTTTAGGATTGATGAATCAAGAAGGGAAAACTTGGGTAAAAGCTCTAAAGTGCTCAAGAAGTTGCTTACTGACTCTGAAATTAAGAGCATAATGTTGCATGAGAAAGAATGTGAAATAAACCAACTACCAGCAAGACTTATCTACGTCAATGGCGATCCTTTAAGTCGACAGGAACTGCTTATGTTGCGAAGTTGCCGAAAGCCACCAAAGAATCTAAAACCAGGACAATATTGGTATGACAAAGAATCGGGCTTCTGGGGAAAGGAAGGACATGGACCGAGTCAGATAGTTAGCTCCCAGCTAGAAGTTGGAGGTCGGATCAAGAGGAATGCTAGCAATGGCAATACGAACGTGTGCATCAATAATCGAGAGATCACTAAAAAAGAGCTCCGGATACTGAAGCTGGCTGGAGTGCCTTGTGAAGGAAGACCTTCTTTTTGGGTTAGTGCAGATGGATCATATCAGGAAGAAGGAATGAACAATGGGGGAAAAATATGGGACAAGACTAGAACGAAGCTTGCATGTGCCCTTTATTCTTTGCCTATTCCTTCTAATTCTGTTCGTACTGGAGAGGAAATAGAGGACGGAGCTAAATCTGTTTCTTCCGAGCAGAAAGTTCTTCATAAACTTCTACTTGTTGGCCACAAAAAATCTGGCACGAGTACCATATTCAAGCAGTTCATTGATTTGCCTGAAAGCCTTGTGTCAAGAAAGCAGATGGCTTGCAGAAAAGGACGGGAGCGTTTCGAAGAAGAGATTTTGATGGATGAGAAAAGTAAACAACCAGTGAATGATCCGTCCAGCTCATCAGCAGCAGGGAATGAAAATCAGTTGGAGCGGAAGGACATCTATTCCCTTGGCCCTAAACTGAAAGGATTTGCAGATTGGCTTCTTCAAGTCGTGGTTTCAGGGAACTTTGAAACCATATTCCCGGCTGCTACACGTGTGTATGGTCAATTAGTGGAAGAGTTGTTGAAGGATGAAGCCTTCCAAGCCACATACAGTCGAAGGAACGAACTAGAAATGCTCCCACGAGTTGCTACTTATTTTCTTGATCGGGCGATTGACATTTCAAGCATAGAGTATGACCCTTCTGACAATGATATCTTGTACGCTGAAGGAATCACCTTGTGTAACAGCCTCAGTAGCATGGAGTTCATGTTCCCTGAGTCACGACAAGACTCCCTTCTCGACCCTCCTTATCAGCACGATCTGTCAATAAGGTACCAGCTGATTCGAGTCCATTCCAGTACCCTAGGAGAAAACTGCAAATTGTTGGAGATGTTTGACGACATAAAAATAATCTTATTTTGTGTCGATTTGACAGACTACGATGAATTTGATGAGGATGATAACGGAGTTCTAACAAACCGAATGATAGCAAGCAAGCAACTGTTTGAAAGCATTGTGACACATCAAGCCTCAAGAGGAAAGAACTTCCTTCTCATACTCAACAAGTTTGATCTCTTTGAAGAAAAAATCATCCAAGTTCCTCTTGCTCAATGTGAGTGGTTTGTCGACTTCAATCCAATGATCACTGGAAGAAGTAGCAGCAGCACGAACCCGACATTGGCACAACGAGCGTTTCAGTACATAGCAGTGAAATTCAAGAGATTGTTTTGTTCTTTGACAGATAAAAAGTTGTTTGTTTCACAAACTACAGGGATGGAGCCTGAAAATGTGAATGCTGCTTTGAGATATGCAAGGGAAATAATCAAATGGCAAGTTGACAAACCTAACATCAGCATTACCGAAGTTTCATGTACCAGTGTTGATGCAAGCAGCTTCACATAG 2646 41.65 MAGILKKFFHEKPSSPVNHEDFTGEYSFAIEYKGPGINYEIPRAVPINVDYIPTASVVLSSSQFSDDLSSLPVIQPIVKKLKRGSSSSPNSVISSTSEIQEDGGVCLHANKEDKCNINSCDGVESSSELENFNELKGRIGGVESLEIKNEEDFQGYSNSSDSESVESGLSSSSGIFAVREEEEADNETQPRHGRRPSAVTFLDPQTSNTISEEAESSQFEGESIQEMPRAERKGKKGSCYFCLKGNRFTEKEVCVVCGAKYCFDCIIRAMGTMPEGRKCISCIGFRIDESRRENLGKSSKVLKKLLTDSEIKSIMLHEKECEINQLPARLIYVNGDPLSRQELLMLRSCRKPPKNLKPGQYWYDKESGFWGKEGHGPSQIVSSQLEVGGRIKRNASNGNTNVCINNREITKKELRILKLAGVPCEGRPSFWVSADGSYQEEGMNNGGKIWDKTRTKLACALYSLPIPSNSVRTGEEIEDGAKSVSSEQKVLHKLLLVGHKKSGTSTIFKQFIDLPESLVSRKQMACRKGRERFEEEILMDEKSKQPVNDPSSSSAAGNENQLERKDIYSLGPKLKGFADWLLQVVVSGNFETIFPAATRVYGQLVEELLKDEAFQATYSRRNELEMLPRVATYFLDRAIDISSIEYDPSDNDILYAEGITLCNSLSSMEFMFPESRQDSLLDPPYQHDLSIRYQLIRVHSSTLGENCKLLEMFDDIKIILFCVDLTDYDEFDEDDNGVLTNRMIASKQLFESIVTHQASRGKNFLLILNKFDLFEEKIIQVPLAQCEWFVDFNPMITGRSSSSTNPTLAQRAFQYIAVKFKRLFCSLTDKKLFVSQTTGMEPENVNAALRYAREIIKWQVDKPNISITEVSCTSVDASSFT 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4668830 4675009 + MELO3C021939.2.1 Cme11g00480 341143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g00480 881 MobiDBLite consensus disorder prediction 200 223 - -
Cme11g00480 881 Gene3D - 665 862 IPR027417 -
Cme11g00480 881 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 16 879 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme11g00480 881 Gene3D - 524 657 IPR011025 GO:0007165
Cme11g00480 881 SUPERFAMILY Transducin (alpha subunit), insertion domain 581 657 IPR011025 GO:0007165
Cme11g00480 881 Pfam G-protein alpha subunit 481 856 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme11g00480 881 MobiDBLite consensus disorder prediction 535 560 - -
Cme11g00480 881 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 2 16 879 - -
Cme11g00480 881 MobiDBLite consensus disorder prediction 152 174 - -
Cme11g00480 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 859 IPR027417 -
Cme11g00480 881 SMART galpha_1 471 865 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme11g00480 881 ProSiteProfiles G-alpha domain profile. 490 868 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme11g00480 881 MobiDBLite consensus disorder prediction 178 192 - -
Cme11g00480 881 MobiDBLite consensus disorder prediction 152 229 - -
Cme11g00480 881 MobiDBLite consensus disorder prediction 545 560 - -
Cme11g00480 881 PRINTS Alpha G protein (transducin) signature 493 508 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme11g00480 881 PRINTS Alpha G protein (transducin) signature 764 773 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cme11g00480 881 PRINTS Alpha G protein (transducin) signature 716 744 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g00480 - - - csv:101202880 1571.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02435 Cme-Chr6:31403596 Cme11g00480 Cme-Chr11:4668830 0 transposed
Cme07g00170 Cme-Chr7:1125967 Cme11g00480 Cme-Chr11:4668830 1.73E-31 transposed
Cme12g00010 Cme-Chr12:173614 Cme11g00480 Cme-Chr11:4668830 3.57E-06 transposed
Cme12g02053 Cme-Chr12:26025840 Cme11g00480 Cme-Chr11:4668830 0 transposed
Cme11g00480 Cme-Chr11:4668830 Cme08g00527 Cme-Chr8:3290096 9.10E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g526 . Blo15g00719 . . Bpe07g00403 . . Bma12g00482 . . Cma02g00427 Cma20g00879 Car02g00284 Car20g00758 . . . . . . . . . . . . . . . . . Cone12ag1124 Cone8ag1168 . . Lsi10g00329 . Chy11g00419 . . . . . . . . . Sed05g3643 Cmo02g00428 Cmo20g00886 . . . . . Cpe05g01234 Bhi10g02061 Tan05g1365 Cmetu11g1444 . Hepe08g1048 . . Cla09g01736 Cam09g1830 Cec09g1890 Cco09g1983 . . Cre01g0680 . Csa02g01217 . Cme11g00480
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004689 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g00480 Cme_Chr11 FPKM 0.377193 0.0 1.52659 1.53053 0.663299 0.819258 0.508796 0.208796 0.176949 0.002168